Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00734 ATGGGTTCTTCTTGTCAATGCTTGCTACTAATCATGACATTGCAAGAGTGCGATTGTGACAATATTGTTTACTCAAATGATTACACACCAGGAATAGACCCATTTTATGTCTTAATCATTGTGAGTATCAATTGGAGAAGGTACAATACCTGTAGATATCCTTTGCACATATGGATCGTGGTTGATTATACCTCTGTGTTTGCTTTTCGCCTTCTGCTGTTCATAGATAATGCACTTTCAGCTGGAATGGGATTACCTTCTCTTCTTATACTCACTACTTCTGGGGAAGCTCCTAAGTTCCTCAGATTCATAAGGGGTGTCTTGTTCTTACTGTTGAATTTAAATTTCGTTAGAGATTTCGGATGGCAGCAGCGATATGCTCGATTCTGTGGACGAGTTGTGGTTCTTTCTATTCTATCTCTATTGCTGTACCCCTTTCTATGTGCGTGGACTGTAATTGGGACTCTCTGGTTTAGAGATGCTAAAGATTGTCTGCCTGAAGAAGGACAGAAATGGGGCTTCCTCATTTGGTTGCTTTTCAGCTACTGTGCCCTCCTTTGCGTTGCCTGCTTGTCAATTGGAAAGTGGTTAGCGCGTCGACAAGCTCACTTGTTCCGTGCGCAACAAGGCATACCGGTGTCGGAATATGGGGTACTGGTTGATATGATTAGAGTTCCTGATTGGGCATTTGAAGCTGCAGGATTGGAAACACGAGGCATTGGCCAAGATGCTACTGGGTACCATCCCGGGTTGTTCTTAACCTCGGCTCAGGTTCGTGGTATGCCATGTGCTCACAATTTCCACGTCGAATGTATCGACGAGTGGCTTCGTCTCAACGTTAAATGTCCTCGATGTCGCTCCTCCGTCTTCCCAAATCTCGACCTCAGCGCTCTATCAAACCTACATTCAGACACAGAACAAACATCTGCCATTGCTTTCGTAACAAGCCAACCTTCAAGTCTGTCGAGATCAACTCCGAGCCACCGCGCATCTCAGACCGAAAACACAGCAGGCCTCTATACCGACACGACCTTGGATGCCATGGAGAACGGAAGCTCACCCATTTTGAACCATCTTAACCAGAATTGCTCAGCCCCT 1098 45.63 MGSSCQCLLLIMTLQECDCDNIVYSNDYTPGIDPFYVLIIVSINWRRYNTCRYPLHIWIVVDYTSVFAFRLLLFIDNALSAGMGLPSLLILTTSGEAPKFLRFIRGVLFLLLNLNFVRDFGWQQRYARFCGRVVVLSILSLLLYPFLCAWTVIGTLWFRDAKDCLPEEGQKWGFLIWLLFSYCALLCVACLSIGKWLARRQAHLFRAQQGIPVSEYGVLVDMIRVPDWAFEAAGLETRGIGQDATGYHPGLFLTSAQVRGMPCAHNFHVECIDEWLRLNVKCPRCRSSVFPNLDLSALSNLHSDTEQTSAIAFVTSQPSSLSRSTPSHRASQTENTAGLYTDTTLDAMENGSSPILNHLNQNCSAP 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8446837 8449583 - Carg07684-RA Car13g00734 159651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00734 366 ProSiteProfiles Zinc finger RING-type profile. 261 286 IPR001841 -
Car13g00734 366 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 38 257 IPR044793 GO:0004842|GO:0010182
Car13g00734 366 SUPERFAMILY RING/U-box 256 294 - -
Car13g00734 366 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 245 291 IPR013083 -
Car13g00734 366 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 257 351 - -
Car13g00734 366 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 38 257 - -
Car13g00734 366 Pfam Ring finger domain 255 286 IPR001841 -
Car13g00734 366 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 257 351 IPR044793 GO:0004842|GO:0010182
Car13g00734 366 MobiDBLite consensus disorder prediction 315 340 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car10g00121 Car13g00734 CCT
Car11g00100 Car13g00734 CCT
Car13g00734 Car18g00155 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car13g00734 Car-Chr13:8446837 Car18g00155 Car-Chr18:834119 4.13E-158 dispersed
Car10g00121 Car-Chr10:569970 Car13g00734 Car-Chr13:8446837 6.27E-131 wgd
Car11g00100 Car-Chr11:574218 Car13g00734 Car-Chr13:8446837 5.66E-130 wgd
Car13g00734 Car-Chr13:8446837 Car18g00152 Car-Chr18:820742 1.70E-06 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00734 K16284 - csv:101222360 493.041