Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00744 ATGGTTGGCCATGGCAATCACAGGTTGAAACTCTCCATCTTCCACCACCGATCTTCGTCGGACTCGAAACCTGAACGGCCGGTAGAGTATCCCAGAGAGTATCTCTGCGAAATTTCCAAGTCGTTAATGGCGGATCCGGTTGTCGTCTCCTCCGGTCAGACGTTCGAGCGCCTCTGTATTCAAGTTTGTCAAGAATTGGGGTTTTCGCCGAAGCTTGAAGATGGATCGAGGCTGGATTTCACCTCTGTTATAACCAACAGAAATATGAGATTCACCATTCTCAAATGGTGCGATGACAACGGAATCGAACACCCACGACCCCCTCTGTACACCTCTATTGAACTCGTTGTTCGTCAATTAATGGAGAAGGAGAGACAAGAGAATCGATTCGAGGCTTCTGATAGCGAGTTGTTAAGAGGCGTCGCCGATAAACCGGCGGGAGTTGCAGTTCATGCGACTACGGAGGTTGGGTTCCGAGTCAACCGATTTCAACTCAACTCGCCGCCGGAAACGGAGGAGATCGTACGTGAAAGTACTATTTTGCCCTTCAAAACGCAACCCTCTTGTTACGCCGCTCATTCTTCGTCTTCCTCGAGCTTCGACAGAGGAAGTTCCGATTCGTATACACCAAATTCAGAAGAGGAATCTCGTCTCATCATGAAATTCAGAAGCGGCGATGAATGCGAACAACAAGAAGGAGTGATTTCCCTAAGAAAATTGACCAAATCCAACGAATCAACTAGGGCTTCTATATGCACAAAGGAATTCCTCGCCGCACTACTTCCTCTGGTTTCATCCAGATCTACAAATATCCAGATCAATGCCGTTGCTTCCGTCGTGAATCTCTCCCTCGAGAAATCGAACAAATTGAAGATCCTCCGAGCAGGATTCGTTCCGTCATTAATCGACGTTTTAGACAGCGGATACGCGGAATCTCAAGAACACGCAGCCGGTGCTCTGTTCAGTTTATCATTAGAGGACGAGAACAAAATGGCGATTGGAATTCTCGGCGCGTTACCGGTACTGATGAACACACTCCGATCCGAGAGTGAGCGGACGAGGAACGATTCGGCCCTTTGTTTGTACCATTTGACTCTAAACCCTAGCAACCGTGTGAAACTAGTGAAACTCGGCGCCGTTCCAATACTTCTATCGTTGACGAGAATCGACGGTTCTGCGAGCCGAATCCTGCTGATTCTATGCAATCTCGCCGTCTGTGCCGACGGAAGATCGGCGATGCTGGATGCGAACGCGGTGGATTGTTTGGTCGGGATGTTGAGGGAGAAAGAGATGGATTCCGAGTCGACTCGGGAGAATTGTGTGGTAGCGCTGCACGCATTGAGTCAAGGAGGATTCCGATTCAAGGGATTGGCGAAGGCGGCCGGCGCGGTAGAGGTTCTAAGAGAGGTTGAAGAAAGGGGAAGCGAGAGGGCGCGGGAGAAGGCCAAGAGGATCTTGGAGATGATGAGAACTGGCGGGAGCGGTTCCGTTGAGATCGAAGGCGTCCGCCGACATGGGCTCGACGCCGGTGGAGTCAGCTGGACCGGCCGGGCTGGTGCTGCCTTGAACCGGTATTCTACCAATACTACTAAGTTTTGA 1599 50.72 MVGHGNHRLKLSIFHHRSSSDSKPERPVEYPREYLCEISKSLMADPVVVSSGQTFERLCIQVCQELGFSPKLEDGSRLDFTSVITNRNMRFTILKWCDDNGIEHPRPPLYTSIELVVRQLMEKERQENRFEASDSELLRGVADKPAGVAVHATTEVGFRVNRFQLNSPPETEEIVRESTILPFKTQPSCYAAHSSSSSSFDRGSSDSYTPNSEEESRLIMKFRSGDECEQQEGVISLRKLTKSNESTRASICTKEFLAALLPLVSSRSTNIQINAVASVVNLSLEKSNKLKILRAGFVPSLIDVLDSGYAESQEHAAGALFSLSLEDENKMAIGILGALPVLMNTLRSESERTRNDSALCLYHLTLNPSNRVKLVKLGAVPILLSLTRIDGSASRILLILCNLAVCADGRSAMLDANAVDCLVGMLREKEMDSESTRENCVVALHALSQGGFRFKGLAKAAGAVEVLREVEERGSERAREKAKRILEMMRTGGSGSVEIEGVRRHGLDAGGVSWTGRAGAALNRYSTNTTKF 532
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
13 8486765 8488363 - Carg07694-RA Car13g00744 159661
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Car13g00744 532 MobiDBLite consensus disorder prediction 193 214 - -
Car13g00744 532 Gene3D - 395 493 IPR011989 -
Car13g00744 532 Gene3D - 215 394 IPR011989 -
Car13g00744 532 ProSiteProfiles U-box domain profile. 29 103 IPR003613 GO:0004842|GO:0016567
Car13g00744 532 SUPERFAMILY RING/U-box 16 106 - -
Car13g00744 532 SMART Ubox_2 33 96 IPR003613 GO:0004842|GO:0016567
Car13g00744 532 PANTHER U BOX DOMAIN-CONTAINING 1 497 - -
Car13g00744 532 SUPERFAMILY ARM repeat 222 486 IPR016024 -
Car13g00744 532 MobiDBLite consensus disorder prediction 193 215 - -
Car13g00744 532 Pfam Armadillo/beta-catenin-like repeat 327 365 IPR000225 GO:0005515
Car13g00744 532 Pfam U-box domain 31 100 IPR003613 GO:0004842|GO:0016567
Car13g00744 532 SMART arm_5 243 284 IPR000225 GO:0005515
Car13g00744 532 SMART arm_5 326 366 IPR000225 GO:0005515
Car13g00744 532 SMART arm_5 367 405 IPR000225 GO:0005515
Car13g00744 532 SMART arm_5 406 449 IPR000225 GO:0005515
Car13g00744 532 SMART arm_5 285 325 IPR000225 GO:0005515
Car13g00744 532 CDD RING-Ubox 35 71 - -
Car13g00744 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 296 333 IPR000225 GO:0005515
Car13g00744 532 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 1 497 - -
Car13g00744 532 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 104 IPR013083 -
Car13g00744 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 337 379 IPR000225 GO:0005515
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car13g00744 Car-Chr13:8486765 Car04g00936 Car-Chr4:5378929 4.40E-14 dispersed
Car10g00140 Car-Chr10:669534 Car13g00744 Car-Chr13:8486765 0 wgd
Car11g00114 Car-Chr11:657657 Car13g00744 Car-Chr13:8486765 0 wgd
Car13g00744 Car-Chr13:8486765 Car15g00301 Car-Chr15:1625422 8.18E-155 wgd
Car13g00744 Car-Chr13:8486765 Car18g00141 Car-Chr18:771106 0 wgd
Car13g00744 Car-Chr13:8486765 Car04g02629 Car-Chr4:20494167 1.57E-149 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00744 - - csv:101221183 876.7