Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00747 ATGGCGGCTCTGCCATCCTCTTCCGCTCTACCGGATTCTTGTTCCTCCAGGCACCACACTTACAGTAGGAAGCAGAAATCCCTTGGTCTTTTATGCTCAAATTTTTTGAGCTTGTATAACCACGATGGAGTCCATTCGATTGGGCTTGATGATGCCGCATCGCGATTAGGTGTGGAAAGGCGGCGGATCTACGATATCGTGAATGTCTTGGAAAGCGTCGGGGTTCTCTCGAGAAAGGCGAAGAATCAGTACAGCTGGAATGGGTTTGGGGCAATCCCTAAGGCCTTACAAGATCTTAAAGAAGAGGGCTTGAAGGAGAATTGTAGTGCATCTGATTGCAACGATTATGCAAAAGTCTCGGATGATGAAGACGATGATGAAAGATTTTCCAATCCGACTGGAAGCCAGAACTCAACTGCAGCCGTGCCGAAATCATCTTCATCATCGCTGAAAGCCGACAATAGAAGGGAAAAGTCATTGGCTCTCCTGACGCAAAATTTTGTGAAGCTATTTATTTGCAGTCATGTGAATATGATTTCCCTTGATGAAGCAGCAAAACTCTTATTAGGAGATGGTCACAATTCATCAATAATGAGAACAAAGGTAAGGAGGCTATATGACATTGCGAATGTGCTGTCTTCTATGAATCTAATTGAAAAGACCCATACAGCTGACACAAGAAAGCCTGCGTTTAGGTGGTTGGGGGTGAGGGGTAAGGTCAAGAATGAGCCTACCGTTCTTCCAGAGTCCAGAAAAAGGGCATTTGGAACTGACGTAACAAATGTCAGTTATAAGAAGACTAAGGCCGAAAGTTCTGCCTATCAGGGTTTAAATCATTGTCTCAATGTGCAAAAGCTAGTGCAGTGCGAGAATTCTTCGCAAGAGGATAGCCAGAACAGTCAGGATCAGGAATGTGAACGAACTTCCAAGAGCTATCAGTTTGGACCGTTTTCTCCAGTAACAGTAGCTAAGGTTAGTGTCTCAGATAATAACAATGTGAAGCGGAGTCATGACTGGGAAAGCCTTTCCTCAACATTCCGCCCTCAGTATCACAACCAAGCACTTCCACCGGTTTACAACTTTCAATTATTCTTCAGCACGCTTCTCATGTTTGATATTGTAACCTTTATTGGTCAGTATTAG 1143 44.09 MAALPSSSALPDSCSSRHHTYSRKQKSLGLLCSNFLSLYNHDGVHSIGLDDAASRLGVERRRIYDIVNVLESVGVLSRKAKNQYSWNGFGAIPKALQDLKEEGLKENCSASDCNDYAKVSDDEDDDERFSNPTGSQNSTAAVPKSSSSSLKADNRREKSLALLTQNFVKLFICSHVNMISLDEAAKLLLGDGHNSSIMRTKVRRLYDIANVLSSMNLIEKTHTADTRKPAFRWLGVRGKVKNEPTVLPESRKRAFGTDVTNVSYKKTKAESSAYQGLNHCLNVQKLVQCENSSQEDSQNSQDQECERTSKSYQFGPFSPVTVAKVSVSDNNNVKRSHDWESLSSTFRPQYHNQALPPVYNFQLFFSTLLMFDIVTFIGQY 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8510450 8513766 - Carg07697-RA Car13g00747 159664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00747 380 MobiDBLite consensus disorder prediction 131 149 - -
Car13g00747 380 MobiDBLite consensus disorder prediction 119 153 - -
Car13g00747 380 Pfam E2F/DP family winged-helix DNA-binding domain 157 235 IPR003316 GO:0005667|GO:0006355
Car13g00747 380 Pfam E2F/DP family winged-helix DNA-binding domain 24 88 IPR003316 GO:0005667|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car13g00747 Car-Chr13:8510450 Car07g00815 Car-Chr7:4316011 1.31E-11 dispersed
Car10g00143 Car-Chr10:685152 Car13g00747 Car-Chr13:8510450 7.16E-125 wgd
Car13g00747 Car-Chr13:8510450 Car18g00138 Car-Chr18:741325 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4560 PF02319 E2F_TDP 2.20E-20 CL0123 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00747 K09391 - csv:101219210 644.425