Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00747 ATGGCGGCTCTGCCATCCTCTTCCGCTCTACCGGATTCTTGTTCCTCCAGGCACCACACTTACAGTAGGAAGCAGAAATCCCTTGGTCTTTTATGCTCAAATTTTTTGAGCTTGTATAACCACGATGGAGTCCATTCGATTGGGCTTGATGATGCCGCATCGCGATTAGGTGTGGAAAGGCGGCGGATCTACGATATCGTGAATGTCTTGGAAAGCGTCGGGGTTCTCTCGAGAAAGGCGAAGAATCAGTACAGCTGGAATGGGTTTGGGGCAATCCCTAAGGCCTTACAAGATCTTAAAGAAGAGGGCTTGAAGGAGAATTGTAGTGCATCTGATTGCAACGATTATGCAAAAGTCTCGGATGATGAAGACGATGATGAAAGATTTTCCAATCCGACTGGAAGCCAGAACTCAACTGCAGCCGTGCCGAAATCATCTTCATCATCGCTGAAAGCCGACAATAGAAGGGAAAAGTCATTGGCTCTCCTGACGCAAAATTTTGTGAAGCTATTTATTTGCAGTCATGTGAATATGATTTCCCTTGATGAAGCAGCAAAACTCTTATTAGGAGATGGTCACAATTCATCAATAATGAGAACAAAGGTAAGGAGGCTATATGACATTGCGAATGTGCTGTCTTCTATGAATCTAATTGAAAAGACCCATACAGCTGACACAAGAAAGCCTGCGTTTAGGTGGTTGGGGGTGAGGGGTAAGGTCAAGAATGAGCCTACCGTTCTTCCAGAGTCCAGAAAAAGGGCATTTGGAACTGACGTAACAAATGTCAGTTATAAGAAGACTAAGGCCGAAAGTTCTGCCTATCAGGGTTTAAATCATTGTCTCAATGTGCAAAAGCTAGTGCAGTGCGAGAATTCTTCGCAAGAGGATAGCCAGAACAGTCAGGATCAGGAATGTGAACGAACTTCCAAGAGCTATCAGTTTGGACCGTTTTCTCCAGTAACAGTAGCTAAGGTTAGTGTCTCAGATAATAACAATGTGAAGCGGAGTCATGACTGGGAAAGCCTTTCCTCAACATTCCGCCCTCAGTATCACAACCAAGCACTTCCACCGGTTTACAACTTTCAATTATTCTTCAGCACGCTTCTCATGTTTGATATTGTAACCTTTATTGGTCAGTATTAG 1143 44.09 MAALPSSSALPDSCSSRHHTYSRKQKSLGLLCSNFLSLYNHDGVHSIGLDDAASRLGVERRRIYDIVNVLESVGVLSRKAKNQYSWNGFGAIPKALQDLKEEGLKENCSASDCNDYAKVSDDEDDDERFSNPTGSQNSTAAVPKSSSSSLKADNRREKSLALLTQNFVKLFICSHVNMISLDEAAKLLLGDGHNSSIMRTKVRRLYDIANVLSSMNLIEKTHTADTRKPAFRWLGVRGKVKNEPTVLPESRKRAFGTDVTNVSYKKTKAESSAYQGLNHCLNVQKLVQCENSSQEDSQNSQDQECERTSKSYQFGPFSPVTVAKVSVSDNNNVKRSHDWESLSSTFRPQYHNQALPPVYNFQLFFSTLLMFDIVTFIGQY 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8510450 8513766 - Carg07697-RA Car13g00747 159664

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00747 380 MobiDBLite consensus disorder prediction 131 149 - -
Car13g00747 380 MobiDBLite consensus disorder prediction 119 153 - -
Car13g00747 380 Pfam E2F/DP family winged-helix DNA-binding domain 157 235 IPR003316 GO:0005667|GO:0006355
Car13g00747 380 Pfam E2F/DP family winged-helix DNA-binding domain 24 88 IPR003316 GO:0005667|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00747 K09391 E2F7_8; transcription factor E2F7/8 - csv:101219210 644.425
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car13g00747 Car-Chr13:8510450 Car07g00815 Car-Chr7:4316011 1.31E-11 dispersed
Car10g00143 Car-Chr10:685152 Car13g00747 Car-Chr13:8510450 7.16E-125 wgd
Car13g00747 Car-Chr13:8510450 Car18g00138 Car-Chr18:741325 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car13g00747 . 3 360 E2F-DP Transcription Factor Family AT3G48160 54.6 1.2e-95 347.4
Car18g00138 CCT,CST 3 352 E2F-DP Transcription Factor Family AT3G48160 54.9 2.7e-92 336.3
Car02g01097 CST 55 475 E2F-DP Transcription Factor Family AT2G36010 55.5 8.3e-120 427.9
Car03g01015 CST 11 459 E2F-DP Transcription Factor Family AT2G36010 52.1 1.7e-109 393.7
Car07g00815 CST 367 749 E2F-DP Transcription Factor Family AT2G36010 54.8 1.8e-98 357.1
Car02g01097 CST 58 482 E2F-DP Transcription Factor Family AT5G22220 56.5 3.3e-113 406.0
Car03g01015 CST 50 446 E2F-DP Transcription Factor Family AT5G22220 50.4 8.6e-90 328.2
Car07g00815 CST 397 757 E2F-DP Transcription Factor Family AT5G22220 53.8 3.7e-85 312.8
Car20g00133 CST 10 292 E2F-DP Transcription Factor Family AT5G22220 53.8 1.6e-59 227.6
Car05g00249 CCT 155 410 E2F-DP Transcription Factor Family AT1G47870 53.7 3.3e-66 249.6
Car02g01097 CST 173 449 E2F-DP Transcription Factor Family AT1G47870 50.9 5.8e-63 238.8
Car02g01097 CST 58 482 E2F-DP Transcription Factor Family AT5G22220 56.5 3.3e-113 406.0
Car03g01015 CST 50 446 E2F-DP Transcription Factor Family AT5G22220 50.4 8.6e-90 328.2
Car07g00815 CST 397 757 E2F-DP Transcription Factor Family AT5G22220 53.8 3.7e-85 312.8
Car20g00133 CST 10 292 E2F-DP Transcription Factor Family AT5G22220 53.8 1.6e-59 227.6
Car02g01097 CST 55 475 E2F-DP Transcription Factor Family AT2G36010 55.5 8.3e-120 427.9
Car03g01015 CST 11 459 E2F-DP Transcription Factor Family AT2G36010 52.1 1.7e-109 393.7
Car07g00815 CST 367 749 E2F-DP Transcription Factor Family AT2G36010 54.8 1.8e-98 357.1
Car05g00249 CCT 155 410 E2F-DP Transcription Factor Family AT1G47870 53.7 3.3e-66 249.6
Car02g01097 CST 173 449 E2F-DP Transcription Factor Family AT1G47870 50.9 5.8e-63 238.8
Car13g00747 . 3 360 E2F-DP Transcription Factor Family AT3G48160 54.6 1.2e-95 347.4
Car18g00138 CCT,CST 3 352 E2F-DP Transcription Factor Family AT3G48160 54.9 2.7e-92 336.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001341 2 8 2 2 1 2 3 2 2 2 2 2 2 2 2 3 2 4 3 2 2 1 2 2 2 2 2 5 4 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4560 PF02319 E2F_TDP 2.20E-20 CL0123 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car13g00747 Car_Chr13 FPKM 28.495321 31.228334 2.990796 2.409042 6.017654 5.464422 6.267003 0.322626 0.163043 0.0