Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00748 ATGTTTCACAGAAACATTAATGGAGGAGTAAACAAGGCGAAGAAGAAGATTGTTTTTCTCCATCTTTGCTCACCAAAACGCTGCTTGTCGCTCTCATGTCGCGATTTCACTACCGAATCGGAACCCCAATCTAGCTCCGCCCTAGATGCCACCGCTGTGGATATCGCCAATCTTGTCCTAGAATCTGACCCAAAAATCTTGAGGGGAATCCTCCATGGATCACAAGTTCAATTTACGCCTGAACTTGTGAACAAGGTTCTCAAGCGCCTATGGTTCCATGGACCGAAAGCGCTGCAATTCTTCAAACAACTCGAGTACCATCCATCTTATGCCCATTCCTCGTCCTCCTTCGACCATGCCATCGACATTGCAGGCCGTATGCGCGACTACAAGTCTGTATGGGCTCTAGTGGCTCGAATGCGAGCTCGGCGGATTGGACCCAGTTCGAAAACCTTCGCAATTATTGCTGAGCGGTTCGTAGGCGCTGGAAAACCAGACAGAGCGATCAAGGTTTTCTTGTCTATGCGGGAGCATGGCTGTCATCAGGATCTTCATTCATTTAACACCATTCTTGATATCCTCTGTAAGTCAAAACGTGTAGAAATGGCTTACAACCATCTATTTAAGGTTTTGAGAGGAAAATTTAAGGCTGATGTTGTTAGCTATAACATAATTGCAAATGGGTGGTGCTTGATTAAGCGTACACCGAAAGCGCTAGAGATTTTGAAGGAGATGGTGGATAGAGGTTTAACTCCAACTATTACTACTTACAATATAGTTTTAAAAGGGTATTTTAGAGCTGGTCAGATTAAGGAAGCTTGGGAGTTCTTTTTGCAAATGAAAGAGAGGGAAGTTGAAATTGATGTTGTTACTTACACTACTATGGTTCATGGGTTTGGTGTTGTTGGTGAAATTAAAAGGGCTCGGAAGGTTTTTGATGAAATGATTGGCGAAGGTGTTCTTCCTTCAACAGCTACTTACAATGCTATGATACAGGTTTTGTGTAAGAAAGATAGCGTGGAGAATGCTGTAATGTTGTTTGAGGATATGATTAAAAGGGGTTATGTGCCAAATTTAACCACATATAATGTGCTTATAAGAGGATTGTGTCATGCAGGCAATATGGATAAGGCTATGGAGTTTATAGAGAGAATGAAAACTGATGGGTGTGAGCCAAATGTTCAGACATATAACGTTGTCATTCGATACTTTTGTGATGCTGGTGACATAGAAAAGGGGTTGAGTGTGTTTGAGAAGATGGGGCACATGGGTTGTTTACCAAATTTGGATACTTACAATGTTATGATTAGTGCAATGTTTGTGAGGAAAGAGTCTAAAGATCTAGTGGTTGCTGGGAAGCTGTTGGTTGAGATGATCGATAAAGGATTCCTCCCTCGAAAGTTCACTTTTAATCGAGTCCTAAACGGGCTTTTGCTAACAGGTAATCAAGCTTTTGCCAATGAGATATTGAGATTGCAGAGCCAATGTGGTCGTCTTCCTCGCAAATTTAAGTTATGA 1518 41.96 MFHRNINGGVNKAKKKIVFLHLCSPKRCLSLSCRDFTTESEPQSSSALDATAVDIANLVLESDPKILRGILHGSQVQFTPELVNKVLKRLWFHGPKALQFFKQLEYHPSYAHSSSSFDHAIDIAGRMRDYKSVWALVARMRARRIGPSSKTFAIIAERFVGAGKPDRAIKVFLSMREHGCHQDLHSFNTILDILCKSKRVEMAYNHLFKVLRGKFKADVVSYNIIANGWCLIKRTPKALEILKEMVDRGLTPTITTYNIVLKGYFRAGQIKEAWEFFLQMKEREVEIDVVTYTTMVHGFGVVGEIKRARKVFDEMIGEGVLPSTATYNAMIQVLCKKDSVENAVMLFEDMIKRGYVPNLTTYNVLIRGLCHAGNMDKAMEFIERMKTDGCEPNVQTYNVVIRYFCDAGDIEKGLSVFEKMGHMGCLPNLDTYNVMISAMFVRKESKDLVVAGKLLVEMIDKGFLPRKFTFNRVLNGLLLTGNQAFANEILRLQSQCGRLPRKFKL 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8515405 8516922 - Carg07698-RA Car13g00748 159665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00748 505 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 218 252 IPR002885 -
Car13g00748 505 Pfam PPR repeat 162 180 IPR002885 -
Car13g00748 505 Pfam PPR repeat 220 250 IPR002885 -
Car13g00748 505 Pfam PPR repeat 186 205 IPR002885 -
Car13g00748 505 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 393 427 IPR002885 -
Car13g00748 505 Pfam PPR repeat family 393 439 IPR002885 -
Car13g00748 505 Pfam PPR repeat family 252 299 IPR002885 -
Car13g00748 505 Pfam PPR repeat family 322 371 IPR002885 -
Car13g00748 505 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 358 392 IPR002885 -
Car13g00748 505 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 148 182 IPR002885 -
Car13g00748 505 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 288 322 IPR002885 -
Car13g00748 505 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 253 287 IPR002885 -
Car13g00748 505 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 323 357 IPR002885 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car10g00143 Car13g00748 CCT
Car10g00272 Car13g00748 CCT
Car11g00196 Car13g00748 CCT
Car13g00748 Car18g00138 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car13g00354 Car-Chr13:6156432 Car13g00748 Car-Chr13:8515405 1.31E-26 dispersed
Car13g00748 Car-Chr13:8515405 Car07g00958 Car-Chr7:5428599 3.31E-13 dispersed
Car14g00492 Car-Chr14:2645203 Car13g00748 Car-Chr13:8515405 8.74E-08 dispersed
Car13g00748 Car-Chr13:8515405 Car15g00602 Car-Chr15:3339582 8.44E-25 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00748 - - cmos:111431631 1007.67