Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00753 ATGGCGCTATCACCGTATTTGTCCGTGCCGAATCATCTTGAAATTTCTACAACGTTTCAGCAGCGGTATTTACTGTCTCAACAACTTCCATTTCTCTCAAACCGTTCCAATTTCAGTGTTCGCCGTAGATTTTTCTCAGATAACTGGAGCTTGTTCTCCGACGTTGGGAAGTGTAGAGCGAAGCCGAAGGATCTCGTTCTTGGAAATCCGTCGGTAATTGTTGAGAAAGGCAAGTACAGCTATGACGTTGAAACCCTAATTAATAAGCTCAGTAGCCTCCCGCCTCGAGGCAGCATAGCACGTTGCCTCGATATCTTTAAGAATAGGCTTTCGCTCAATGACTTCAGCTTGGTTTTTAAGGAATTCGCGGCGCGCGGGGACTGGCAACGTTCGTTACGCCTCTTCAAATACATGCAGCGTCAGATATGGTGCAAGCCGAACGAGCACATCTATACCATCATGATCAGCTTGCTCGGCCGCGAAGGATTGCTAGAGAAATGTAGCGAGATATTCGATGAAATGGCGAGCCAGGGCGTAATACGTAGCGTATTTTCTTATACCGCTTTGATAAATGCCTACGGGCGCAATGGTCAGTACGAAATCTCACTTGAACTTCTTGAAAGGATGAAAAGAGATAGAGTGTCGCCTAATATATTGACTTACAATACCGTGATAAATGCATGCGCTAGAGGTGATTTGGATTGGGAGGGATTGTTGGGATTGTTTGCCGAGATGAGGCATGAAGGGGTTCAACCTGATCTTGTTACCTATAATACTTTGCTTAGTGCATGTGCTGCCCGCAGTTTAGGCGATGAGGCAGAGATGGTCTTCAAGACTATGATAGAAGGAGGGATAGTCCCTGAGATAACAACATATAGTTATATTGTCGAAACATTTGGAAAATTGGGTAAGCTCGAGAAAGTTGCTATGCTGCTAAAAGAAATGGAGTCCGAAGGGTATTTGCCCGATATATCATCCTACAATGTGTTAATAGATGCACATGCAAAATCCGGGTCGATTAAGGAGGCAATGGACGTGTTTAAGCAGATGCAAGCTGCAGGATGTGTGCCAAATGCATCCACTTATAGCATTCTATTGAATTTATATGGAAAGCATGGGAGGTATGATGATGTTCGAGAGCTTTTTCTTGAAATGAAAGAGAGCAGTGCCGAGCCAGATGCAACTACTTACAACATTCTCATTCGAGTATTTGGCGAGGGTGGATACTTCAAGGAGGTTGTAACTCTGTTTCATGATTTGGTGGAGGAGAAGATTGACCCAAATATGGAGACATACGAGGGCTTAGTGTTTGCTTGTGGGAAGGGGGGGCTGCACGAGGATGCCAAGAAAATTTTATTTCACATGAATGAGAAAGGAATGGTTCCAAGTTCTAAGGCATATGGTGGACTGATTGAAGCATACGGACAGGCTGCATTGTATGATGAAGCTCTTGTTGCCTTTAACACAATGAACGAAGTGGGAAGTAAGTCAACCGTTGATACCTATAATTCGCTAATTCACACATTCGCTAAGGGTGGACTCTACAAGGAGCTTGAAGCAATCATATCGAGAATGGGAGAGTCTGGCATTTCAAGGAATGCAAAGTCATTTAGTGGTATTATTGAATGTTACAGGCAAAGTGGTCAGTTTGAAGAAGCTATAAAGGCCTTTGTTGAGATGGAAAAAATGAGATGTAAACCTGATGAGCAGACACTTGAGGCAGTTTTAGGTGTTTATTGCTTTGCAGGTCTTGTAGATGAGAGCAAGGAGCAGTTTCATGAAATTAAAGCTTCAGGAATAGTGCCTAGTGTATTGTGCTACTGCATGATGCTGGCAGTTTATGCCAAGAATGACAGGTGGGATAATGCCTATGAGTTACTCGATGAGATGATTAAAAACAGGGAATCTGGTATTCATCAAGTCATTGGCCAGATGATCAAGGGAGGTTACGATGATGATTCTAATTGGCAGATGGTTGAGTATGTTTTTGACAAACTTAACGCTGAAGGGTGTGGATTGGGAATGAGATTTTACAATACACTGCTAGAAGCACTTTGGTGGCTTGGCCAGAAAGGACGTGCTGCGAGGGTTCTCACTGAAGCAACAAAACGAGGCCTTTTCCCTGAACTTTTCCGCAAAAGCAAACTTGTGTGGTCTGTGGATGTCCACAGAATGTGGGAAGGCGGTGCATATACGGCTATATCTCTTTGGGTTAACAAAATGAATGAAATGCTTATGGATGGGGAGGAGCTGCCTCAGGTTGCAGCTGTAGTAGTTGGAAGGGGGTGGCTGGAGAAGGACACAACCGCACAAAACTTGCCTATCCCAAGGGCTGTCTATTCATTCCTGCAGGATAATGTGTCGTCGTCCTTCACTTTTCCTGGGTGGAACAACAGTCGAATCGTCTGCCAACCGTCTCAACTGAAGCAGCTTCTCGCAGACACAGAAGCATCAACTAGTGAAATTATTACTCTAAATAACTCCCCATTAAATCTTCCAGAAGCGAAGATATCCAGATCTGGTATAAGCAATGACAAATACGAAGATGTTGATTCTAAATCAAGTAACAGGACGGGAACTGAGCTTCTGACTGCAACTGTTTGA 2604 43.86 MALSPYLSVPNHLEISTTFQQRYLLSQQLPFLSNRSNFSVRRRFFSDNWSLFSDVGKCRAKPKDLVLGNPSVIVEKGKYSYDVETLINKLSSLPPRGSIARCLDIFKNRLSLNDFSLVFKEFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLEKCSEIFDEMASQGVIRSVFSYTALINAYGRNGQYEISLELLERMKRDRVSPNILTYNTVINACARGDLDWEGLLGLFAEMRHEGVQPDLVTYNTLLSACAARSLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVAMLLKEMESEGYLPDISSYNVLIDAHAKSGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYDDVRELFLEMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVEEKIDPNMETYEGLVFACGKGGLHEDAKKILFHMNEKGMVPSSKAYGGLIEAYGQAALYDEALVAFNTMNEVGSKSTVDTYNSLIHTFAKGGLYKELEAIISRMGESGISRNAKSFSGIIECYRQSGQFEEAIKAFVEMEKMRCKPDEQTLEAVLGVYCFAGLVDESKEQFHEIKASGIVPSVLCYCMMLAVYAKNDRWDNAYELLDEMIKNRESGIHQVIGQMIKGGYDDDSNWQMVEYVFDKLNAEGCGLGMRFYNTLLEALWWLGQKGRAARVLTEATKRGLFPELFRKSKLVWSVDVHRMWEGGAYTAISLWVNKMNEMLMDGEELPQVAAVVVGRGWLEKDTTAQNLPIPRAVYSFLQDNVSSSFTFPGWNNSRIVCQPSQLKQLLADTEASTSEIITLNNSPLNLPEAKISRSGISNDKYEDVDSKSSNRTGTELLTATV 867
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8537249 8545485 + Carg07703-RA Car13g00753 159670

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00753 867 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 603 633 IPR002885 -
Car13g00753 867 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 533 567 IPR002885 -
Car13g00753 867 Pfam PPR repeat family 322 367 IPR002885 -
Car13g00753 867 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 147 181 IPR002885 -
Car13g00753 867 Pfam Pentatricopeptide repeat domain 170 228 IPR002885 -
Car13g00753 867 Pfam Pentatricopeptide repeat domain 416 476 IPR002885 -
Car13g00753 867 Pfam Pentatricopeptide repeat domain 373 406 IPR002885 -
Car13g00753 867 Pfam Pentatricopeptide repeat domain 241 301 IPR002885 -
Car13g00753 867 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 498 532 IPR002885 -
Car13g00753 867 ProSiteProfiles Smr domain profile. 720 809 IPR002625 -
Car13g00753 867 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 182 216 IPR002885 -
Car13g00753 867 Pfam PPR repeat 606 633 IPR002885 -
Car13g00753 867 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 323 357 IPR002885 -
Car13g00753 867 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 288 322 IPR002885 -
Car13g00753 867 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 253 287 IPR002885 -
Car13g00753 867 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 568 602 IPR002885 -
Car13g00753 867 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 358 392 IPR002885 -
Car13g00753 867 MobiDBLite consensus disorder prediction 843 867 - -
Car13g00753 867 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 393 427 IPR002885 -
Car13g00753 867 Pfam Pentacotripeptide-repeat region of PRORP 481 588 IPR033443 -
Car13g00753 867 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 217 252 IPR002885 -
Car13g00753 867 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 428 462 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00753 - - - csv:101217700 1581.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00739 Car-Chr2:5435684 Car13g00753 Car-Chr13:8537249 2.63E-21 dispersed
Car08g00083 Car-Chr8:518107 Car13g00753 Car-Chr13:8537249 5.02E-15 dispersed
Car08g00386 Car-Chr8:2499988 Car13g00753 Car-Chr13:8537249 3.74E-87 dispersed
Car13g00753 Car-Chr13:8537249 Car17g00976 Car-Chr17:7869671 2.73E-88 dispersed
Car03g00708 Car-Chr3:6190806 Car13g00753 Car-Chr13:8537249 4.48E-08 transposed
Car14g00553 Car-Chr14:3019496 Car13g00753 Car-Chr13:8537249 1.08E-11 transposed
Car17g00368 Car-Chr17:2357706 Car13g00753 Car-Chr13:8537249 1.40E-19 transposed
Car17g01176 Car-Chr17:9013889 Car13g00753 Car-Chr13:8537249 1.17E-11 transposed
Car13g00753 Car-Chr13:8537249 Car18g00135 Car-Chr18:726609 1.03E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g622 . . . . Bpe12g00529 . . . Cmo13g00940 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00101 Csa01g00580 Chy12g01516 Cme12g01962 . . . . . . . . Sed08g2099 . . Cma13g00913 . Car13g00753 . . . Bhi08g01121 Tan05g2402 Cmetu12g1770 . . . . Cla04g01173 Cam04g1230 Cec01g1741 Cco01g1787 Clacu04g1257 Cmu04g1236 Cre01g1531 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008894 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car13g00753 Car_Chr13 FPKM 0.0 0.0 0.0 0.0 0.105903 0.0 0.0 0.0 0.0 0.0