Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00763 ATGGGGGAGAAGCCGGAAGTGTTGGAGGCTGTGTTGAAGGAAGCTGTGGATTTGGAAAATATACCCATTGATGAGGTTTTTGAAAACCTGAGATGTAGCAAAGAGGGTCTTACCAGTGAGGCTGCTGAGGAAAGGCTGAAGATTTTTGGCCACAACAAGCTCGAGGAAAAGAAGGAAAGCAAAGTTTTGAAGTTTTTGGGGTTCATGTGGAATCCTCTATCATGGGTTATGGAAGCTGCTGCAATTATGGCTATTGCACTTGCAAATGGAGGAGGAAAGCCCCCTGACTGGCAAGATTTTGTGGGTATCATTATTTTGCTTATCATCAACTCCACAATCAGTTTTATTGAGGAAAACAATGCAGGAAACGCTGCTGCTGCTCTCATGGCTCGTCTTGCTCCCAAAGGCAAGGTTCTTCGAGATGGAAGATGGAGCGAGCAAGATGCTTCTATTTTAGTTCCTGGTGACATAATCAGTGTTAAACTTGGGGACATTATTCCAGCTGATGCTCGTCTTCTGGATGGGGATCCATTAAAAATTGACCAGTCTGCACTTACAGGTGAATCGCTTCCTGTAACGAAAGGTCCTGGTGACGGCGTGTACTCGGGTTCTACTTGCAAGCAAGGAGAGATTGAAGCTGTGGTCATTGCTACTGGTGTCCATACCTTTTTTGGTAAAGCTGCTCATCTTGTTGACACCACCAACCAAGTGGGACACTTCCAAAAGGTCTTGACAGCCATAGGGAATTTCTGTATATGTTCCATTGCTTTGGGAATGGTAATAGAGATCATTGTAATGTATCCAATTCAGGACCGTGAGTATCGTCCTGGAATCGATAACCTCCTTGTGCTACTGATTGGAGGAATTCCCATAGCCATGCCTACTGTTCTATCTGTGACAATGGCTATTGGTTCTCATAGGTTATCCCAACAGGGTGCCATCACGAAAAGGATGACGGCTATCGAAGAAATGGCTGGCATGGATGTGCTTTGCAGTGACAAGACAGGAACCCTGACTTTGAACAAGTTAACTGTCGACAAAAATCTCGTTGAGATTTTCAGTAAAGGGATAGATGCAGACATGGTTGTTCTAATGGCTGCTCGAGCGTCGAGAACTGAGAATCAAGATGCTATAGATACTGCTATTGTTGGGATGCTAGCTGATCCAAAGGAGGCGCGTGCTGGGATTCAGGAAGTACATTTCCTTCCTTTCAATCCTACTGATAAGCGAACGGCTTTGACGTATATCGACCATGAGGGCAAGATGCACAGAGTCAGTAAAGGTGCTCCAGAACAGATTCTAAATCTTGCACACAACAAGTCAGAGATAGAACGAAAAGTTCATGCAGTGATCGATAAATTTGCTGAACGAGGTCTGCGCTCGCTTGCTGTAGCATACCAGGAAGTTCCAGAAGGAAGGAAAGAAAGTGCTGGAGGTCCTTGGCAATTCATTGGCCTCTTGCCTTTGTTTGATCCACCAAGGCATGATAGTGCAGAGACAATTCGGAGAGCTTTAAATCTCGGCGTAAATGTGAAAATGATTACCGGAGATCAGCTGGCTATCGGCAAGGAAACAGGACGTCGATTGGGGATGGGAACGAACATGTACCCATCATCTGCTTTGCTAGGACAGGAAAAGGATGAGTCCATTGCTGCTTTACCTGTTGATGACCTTATAGAAAAAGCAGATGGTTTCGCCGGTGTATTCCCGGAGCACAAATACGAGATCGTAAAACGCTTGCAAGCTATGAAACATATCTGTGGAATGACTGGTGACGGAGTGAACGATGCTCCTGCACTTAAAAAAGCAGACATAGGTATAGCTGTTGCAGATGCAACCGATGCAGCTCGGAGTGCTTCTGATATTGTTCTTACTGAGCCTGGTCTCAGTGTTATCATCAGTGCCGTTTTGACCAGTCGAGCAATATTTCAAAGGATGAAGAATTACACGATTTATGCAGTTTCCATCACAATACGTATCGTGCTTGGTTTCATGTTGCTGGCCCTCATCTGGAAATTTGATTTCCCACCATTTATGGTGCTTATTATTGCTATCCTTAACGATGGTACAATCATGACAATATCAAAGGATAGGGTTAAGCCATCTCCTCTCCCAGATAGTTGGAAGCTAGCTGAAATTTTTACTACTGGCATTGTTCTTGGTAGCTACTTGGCAATGATGACGGTTATATTCTTCTGGGCATCGTATAAAACCAACTTTTTCCCTCGAGTCTTCGGGGTACCAACACTTGAAAAAACAGCTCATGATGATTTCCGGAAGCTAGCCTCAGCTATATATCTGCAAGTGAGCACTATCAGTCAAGCACTCATTTTCGTCACGCGATCTCGGAGTTGGTCGTATGTCGAGCGTCCTGGGGTGTTTCTTGTAGTGGCTTTTATTCTTGCTCAACTGGTTGCCACTCTGATTGCTGTGTATGCTAATTGGAGTTTTGCTGCCATTGAAGGAATTGGTTGGGGTTGGGCTGGTGTGATTTGGCTTTATAACATCATCTTTTATATTCCTCTTGATCCTATAAAGTTTGCTATTCGATATGCTTTGAGTGGGAAGGCTTGGGATCTCATGCTTGAGCAAAGGATTGCTTTCACAAGACAAAAGGATTTCGGAAAGGAACAACGCGAGCTGCAATGGGCTCATGCACAAAGAACGCTGCACGGTTTGCAACCGCCTGATACTAAGATGTTCACGGAGCGAACGCATTTCACAGAACTCAATCACATGGCTGAAGAAGCCAAAAGGAGAGCTGAAATTGCTAGATTGAGGGAACTCCATACACTGAAAGGTCATGTAGAATCGGTGGTTCGACTGAAGGGTCTCGATATCGAAACGATTCAACAAGCATACACTGTGTGA 2871 44.69 MGEKPEVLEAVLKEAVDLENIPIDEVFENLRCSKEGLTSEAAEERLKIFGHNKLEEKKESKVLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIIILLIINSTISFIEENNAGNAAAALMARLAPKGKVLRDGRWSEQDASILVPGDIISVKLGDIIPADARLLDGDPLKIDQSALTGESLPVTKGPGDGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDTTNQVGHFQKVLTAIGNFCICSIALGMVIEIIVMYPIQDREYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLVEIFSKGIDADMVVLMAARASRTENQDAIDTAIVGMLADPKEARAGIQEVHFLPFNPTDKRTALTYIDHEGKMHRVSKGAPEQILNLAHNKSEIERKVHAVIDKFAERGLRSLAVAYQEVPEGRKESAGGPWQFIGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQEKDESIAALPVDDLIEKADGFAGVFPEHKYEIVKRLQAMKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLAEIFTTGIVLGSYLAMMTVIFFWASYKTNFFPRVFGVPTLEKTAHDDFRKLASAIYLQVSTISQALIFVTRSRSWSYVERPGVFLVVAFILAQLVATLIAVYANWSFAAIEGIGWGWAGVIWLYNIIFYIPLDPIKFAIRYALSGKAWDLMLEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQPPDTKMFTERTHFTELNHMAEEAKRRAEIARLRELHTLKGHVESVVRLKGLDIETIQQAYTV 956
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8589252 8594772 + Carg07713-RA Car13g00763 159680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00763 956 Gene3D - 328 627 IPR023214 -
Car13g00763 956 PRINTS P-type cation-transporting ATPase superfamily signature 181 195 - -
Car13g00763 956 PRINTS P-type cation-transporting ATPase superfamily signature 331 345 - -
Car13g00763 956 PRINTS P-type cation-transporting ATPase superfamily signature 485 496 - -
Car13g00763 956 PRINTS P-type cation-transporting ATPase superfamily signature 507 517 - -
Car13g00763 956 PRINTS P-type cation-transporting ATPase superfamily signature 590 609 - -
Car13g00763 956 PRINTS P-type cation-transporting ATPase superfamily signature 613 625 - -
Car13g00763 956 CDD P-type_ATPase_H 36 847 IPR006534 GO:0008553|GO:0016021|GO:0120029
Car13g00763 956 PANTHER CALCIUM-TRANSPORTING ATPASE 3 936 - -
Car13g00763 956 SFLD p-type atpase 313 641 IPR044492 -
Car13g00763 956 SMART Cation_ATPase_N_a_2 17 89 IPR004014 -
Car13g00763 956 Gene3D - 134 218 - -
Car13g00763 956 PANTHER PLASMA MEMBRANE ATPASE 1 3 936 - -
Car13g00763 956 SUPERFAMILY HAD-like 327 637 IPR036412 -
Car13g00763 956 PRINTS H+-transporting ATPase (proton pump) signature 447 465 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car13g00763 956 PRINTS H+-transporting ATPase (proton pump) signature 562 578 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car13g00763 956 PRINTS H+-transporting ATPase (proton pump) signature 590 606 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car13g00763 956 PRINTS H+-transporting ATPase (proton pump) signature 621 646 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car13g00763 956 PRINTS H+-transporting ATPase (proton pump) signature 766 787 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car13g00763 956 Pfam haloacid dehalogenase-like hydrolase 327 604 - -
Car13g00763 956 Pfam E1-E2 ATPase 132 310 - -
Car13g00763 956 Gene3D - 905 956 - -
Car13g00763 956 SFLD C1.7: P-type atpase like 313 641 - -
Car13g00763 956 ProSitePatterns E1-E2 ATPases phosphorylation site. 333 339 IPR018303 -
Car13g00763 956 Gene3D - 96 821 - -
Car13g00763 956 SUPERFAMILY Calcium ATPase, transmembrane domain M 17 853 IPR023298 -
Car13g00763 956 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 103 350 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car13g00763 956 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 565 678 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car13g00763 956 Pfam Cation transporter/ATPase, N-terminus 20 83 IPR004014 -
Car13g00763 956 SUPERFAMILY Calcium ATPase, transduction domain A 136 231 IPR008250 -
Car13g00763 956 Gene3D - 343 490 IPR023299 GO:0000166
Car13g00763 956 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 36 812 IPR006534 GO:0008553|GO:0016021|GO:0120029
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car10g00164 Car13g00763 CCT
Car11g00134 Car13g00763 CCT
Car11g00134 Car13g00763 ECH
Car10g00164 Car13g00763 ECH
Car13g00763 Car18g00122 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car13g00763 Car-Chr13:8589252 Car01g00149 Car-Chr1:761718 0 dispersed
Car10g00164 Car-Chr10:789874 Car13g00763 Car-Chr13:8589252 0 wgd
Car11g00134 Car-Chr11:756845 Car13g00763 Car-Chr13:8589252 0 wgd
Car13g00763 Car-Chr13:8589252 Car18g00122 Car-Chr18:649708 0 wgd
Car13g00763 Car-Chr13:8589252 Car04g02647 Car-Chr4:20632240 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00763 K01535 - csv:101214920 1793.48