Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00772 ATGGAGGCTGCTGCTGCTCCTACTTTTGGCCGTCCAAGGCCTGTCGTCAAGCCCGAGAAGCCTGCCGGAGATAGCGACGACGATCGGAATTCTCCCTCTAACCAATCTCTCCTTATTAAGAGAACCACGGAAAAGAAGAGCATGAAAAGTAAAGATAAAACGAGCAACTCATCCGATCAAAAGGATTTAAGCTGCACCAAGATTCAGGAAGAACAATTGGAATCGGCGCGAACAGAGATGGGGGAAGTGAGAGAAGAAAACCAGAGACTAAAAATGAGTTTAGGTCAAATCATGAAGGATTACGAAGCCCTAAAAATGCAATTCCTGGGGATTGTCGGACGGGAAGCGAAGAAATTACCAGAACACGACAAGGAACAACGACAGCGTCCCCATGATGATCAAACTGAGGAAACTGATCTGGTTTCCTTAACGCTTGGGAGATACCCAATGGCGGAGAAGAAGAAGGCGGCCGAGGAGAAGAATATCAATGGAGGCGACAAGGAAGAAGCTGTCAAACAGGCTTTATCTCTTGGTCTGAATTGCAAATTCGAGCAGGAATCAACGCCGGCGACTGTTAAAGAAGCTCATTCCCCCAATCGGAGTTTAACAATTAGCGCTGATCATGAGACGAAGGAGGATGCTGGCGAGACAAATTGGCCGCCGAGTAAAGGATTGAAGACGATGCGAAGCATCGACGATGATGCTCTCCCGCCCAATCCGCCCAAGCGCGCTCGGGTCTGTGTCAGAGCCCGATGCGAAACCACCACGATGAACGACGGGTGCCAATGGCGGAAATACGGGCAAAAGATAGCGAAAGGAAACCCCTGTCCACGAGCATACTACCGCTGCACAGGCTCGCCGACATGTCCTGTTAGAAAACAGGTCCAGAGATGCGCCGATGACATGTCGATTTTAATAACTACCTATGAAGGTAACCATAACCACCCATTACCAGCCTCTGCCACCGCCATGGCTTCCACCACCTCCGCCGCTGCTTCCATGCTCCTCTCTGGCTCCTCCACCTCCTCTGCTCCAAACACGACGGCGGCGGCGGCCTCCTCCTCCTCCTCCTCATCTAACCACGCCCTAAGCTTTTACTCAAATTCAAAACAGAACTTTTACTTACCGAATAACTCCTCGATCATCTCATCCACTTCCCCAACTCACCCAACAATCACTTTGGATCTCACTTCAAATCCTTCTTCGACCTCAAATCCCTCGACCCATTTTGGTAAATTCCCATCCAGTTTCCCCAATTCTCGCTACCCTTTTACCAGTCAACTCGATTTCGGATCTTCCAGAAACAATGTCTTGTCGTGGAATAACGGCGTTCTTAGTTACAACAGAAATAACCACCCCACTACTACACCCACTAATAATATCTATCAAAATTACATCCAACACCAACGAAACGCCGCCATGTCACTGCCACATCAGCATCCGCCATTACCCGACACAATCGCCGCCGCCACAAAGGCCATCACAGCCGACCCCAGCTTCCAATCTGCTCTCGCCGCCGCTCTCACATCCATCATCGGCTCTGGGGGCGCCGGCGCCGGCACCGTAAAGTCATCTGCAAGAAGTGAACAACCATTGTTTCAGTTGACATCGACGGCAACGACCGCGACAAATAAAGGGAATGGATGTGGGACGAGCTTCTTGAGCAATATTACGACGGCAACGCCAAGTAATTCTCCGCCGACGGGAAACATGGCATTTGTTCCAGCAAGTTCATTGCCGTTTTCGAATCCGAAGAGTGCATCCGCGTCGCCAGGTGATCATATTGATCTTACCAATTAA 1800 50.22 MEAAAAPTFGRPRPVVKPEKPAGDSDDDRNSPSNQSLLIKRTTEKKSMKSKDKTSNSSDQKDLSCTKIQEEQLESARTEMGEVREENQRLKMSLGQIMKDYEALKMQFLGIVGREAKKLPEHDKEQRQRPHDDQTEETDLVSLTLGRYPMAEKKKAAEEKNINGGDKEEAVKQALSLGLNCKFEQESTPATVKEAHSPNRSLTISADHETKEDAGETNWPPSKGLKTMRSIDDDALPPNPPKRARVCVRARCETTTMNDGCQWRKYGQKIAKGNPCPRAYYRCTGSPTCPVRKQVQRCADDMSILITTYEGNHNHPLPASATAMASTTSAAASMLLSGSSTSSAPNTTAAAASSSSSSSNHALSFYSNSKQNFYLPNNSSIISSTSPTHPTITLDLTSNPSSTSNPSTHFGKFPSSFPNSRYPFTSQLDFGSSRNNVLSWNNGVLSYNRNNHPTTTPTNNIYQNYIQHQRNAAMSLPHQHPPLPDTIAAATKAITADPSFQSALAAALTSIIGSGGAGAGTVKSSARSEQPLFQLTSTATTATNKGNGCGTSFLSNITTATPSNSPPTGNMAFVPASSLPFSNPKSASASPGDHIDLTN 599
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8627371 8629791 + Carg07722-RA Car13g00772 159689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00772 599 MobiDBLite consensus disorder prediction 208 242 - -
Car13g00772 599 MobiDBLite consensus disorder prediction 337 359 - -
Car13g00772 599 Coils Coil 66 93 - -
Car13g00772 599 Pfam WRKY DNA -binding domain 258 316 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car13g00772 599 MobiDBLite consensus disorder prediction 117 139 - -
Car13g00772 599 ProSiteProfiles WRKY domain profile. 252 318 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car13g00772 599 MobiDBLite consensus disorder prediction 42 87 - -
Car13g00772 599 MobiDBLite consensus disorder prediction 1 87 - -
Car13g00772 599 MobiDBLite consensus disorder prediction 117 138 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car10g00169 Car13g00772 CCT
Car11g00139 Car13g00772 CCT
Car11g00139 Car13g00772 ECH
Car10g00169 Car13g00772 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car13g00772 Car-Chr13:8627371 Car16g00329 Car-Chr16:2017973 6.06E-53 dispersed
Car10g00169 Car-Chr10:815310 Car13g00772 Car-Chr13:8627371 2.18E-70 wgd
Car11g00139 Car-Chr11:785975 Car13g00772 Car-Chr13:8627371 5.28E-94 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4563 PF03106 WRKY 5.70E-24 CL0274 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00772 - - csv:101218344 727.243