Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00787 ATGCCGCCGAGACGATATGCTTTTGGACGGGCCGATGAGGCCACCCACCCTGACTCCATTAGAGCCACCTTGGCTGAGTTCATTTCCACTTTCATCTTCGTCTTCGCCGGGGAAGGCTCTGTTCTTGCTCTTGACAAAATTTTCAGTCCAGCAGATTATGGAAGTTATGGCCATGGAGGTTACAGTCACGGTCACGGTTATGGTCGGAGGAAGACCGACACGGGCCGAGGTGCATCCGATTTAGTTGTGATAGCAATAGCGCACGCATTCGCTCTGTTCTCAGCGGTTGCAGCGAGTATCAACATCTCCGGTGGGCATGTCAATCCGGCTGTGACTTTTGGCGCTCTTCTTGGCGGGAGGATATCACTTATCCGTGGAATTTTCTATTGGGTAGCTCAAATTTTGGGTGCCATCGTCGCTTCACTGCTCTTGAGACTCGCAACCGGTGGCATGAGGCCTATGGGGTTCTTCGTTTCATCAGGGATATCAGAAATGCACGGCTTTCTGCTAGAGATAGTGCTGACGTTCGCCTTGGTGTACACAGTGTACGCAACAGCAATAGACCCAAAGAGAGGCAGTTTGGGGACGATAGCGCCACTGGCAATCGGGTTAATAGTGGGGGCTAATATTCTGGTGGGTGGGGCGTTCGATGGGGCGTGCATGAACCCGGCGAGGGCGTTTGGGCCGTCGTTGGTGGGGTGGAGATGGGACAATCATTGGATCTACTGGATCGGGCCATTGCTGGGAGGTGGGCTTGCTGCGCTTGTTTATGAGTACTTGGTGATTCCTGTTGAGCCTCCTCTGCATACTCACCAGCCCTTGGCTCCGGAGGATTACTAA 840 53.45 MPPRRYAFGRADEATHPDSIRATLAEFISTFIFVFAGEGSVLALDKIFSPADYGSYGHGGYSHGHGYGRRKTDTGRGASDLVVIAIAHAFALFSAVAASINISGGHVNPAVTFGALLGGRISLIRGIFYWVAQILGAIVASLLLRLATGGMRPMGFFVSSGISEMHGFLLEIVLTFALVYTVYATAIDPKRGSLGTIAPLAIGLIVGANILVGGAFDGACMNPARAFGPSLVGWRWDNHWIYWIGPLLGGGLAALVYEYLVIPVEPPLHTHQPLAPEDY 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8691917 8692918 - Carg07737-RA Car13g00787 159704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00787 279 Pfam Major intrinsic protein 14 257 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car13g00787 279 ProSitePatterns MIP family signature. 106 114 IPR022357 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g01082 Car-Chr3:8799843 Car13g00787 Car-Chr13:8691917 6.67E-105 dispersed
Car07g00878 Car-Chr7:4717731 Car13g00787 Car-Chr13:8691917 1.62E-103 dispersed
Car13g00787 Car-Chr13:8691917 Car14g00213 Car-Chr14:1009026 1.90E-91 dispersed
Car13g00787 Car-Chr13:8691917 Car18g00101 Car-Chr18:544821 1.36E-163 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00787 K09873 - csv:101208863 496.123