Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00794 ATGAAGAATTTCGCGTTACTGTCTTTTCTTTTCATTCTCCTTGCCTCTGAGGTCCGCGTCTCCAGAGCCGACGCCTCGCCGGACGCCGTCCGCGACATCGACGGCAAGAAGCTCCGAGCCGGCGTCAACTACTACATCCTCCCTGTTTTCCGCGGAAGAGGCGGCGGCCTAGCCCTAGGCAACCTCCAATCGGACAAATGTCCACTCAACGTCGTTCAAGAACAGTTTGAATTAATGAACGGCCTTCCCGCGGCATTTTTGCCTGTAAACCCTAAAAAAGGCGTCGTTCGAGTTTCGACGGATTTAAACGTCCAATTCGAGGCCAGTACGATCTGCGCCACATCGACGGTATGGAAATTGGACAAATTCGACGAATCGACGAAACAGTGGTTCATCACGATCGGCGGAACGAGAGGAAATCCAGGCGTCAAGACGGTCGACAATTGGTTCAAAATTGAGAAACACGGTAACGATTACAAATTCAAATTCTGTCCGACTGTGTGCGATTTCTGTAAAGTTATGTGCAGAGATGTTGGAATCTTCTTCAAGAACGGAAAGAGGGCTCTGGCTTTGAGCGATACGCCATTCCCTGTCATGTTCAAGGAAGTTTAA 612 49.84 MKNFALLSFLFILLASEVRVSRADASPDAVRDIDGKKLRAGVNYYILPVFRGRGGGLALGNLQSDKCPLNVVQEQFELMNGLPAAFLPVNPKKGVVRVSTDLNVQFEASTICATSTVWKLDKFDESTKQWFITIGGTRGNPGVKTVDNWFKIEKHGNDYKFKFCPTVCDFCKVMCRDVGIFFKNGKRALALSDTPFPVMFKEV 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8793957 8794568 + Carg04878-RA Car13g00794 159711

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00794 203 PANTHER KUNITZ TRYPSIN INHIBITOR 2 7 202 - -
Car13g00794 203 SUPERFAMILY STI-like 26 202 IPR011065 -
Car13g00794 203 Pfam Trypsin and protease inhibitor 30 201 IPR002160 GO:0004866
Car13g00794 203 PANTHER KUNITZ TRYPSIN INHIBITOR 2 7 202 IPR002160 GO:0004866
Car13g00794 203 SMART kul_2 29 203 IPR002160 GO:0004866
Car13g00794 203 Gene3D - 24 202 - -
Car13g00794 203 PRINTS Soybean trypsin inhibitor (Kunitz-type) signature 29 58 IPR002160 GO:0004866
Car13g00794 203 PRINTS Soybean trypsin inhibitor (Kunitz-type) signature 67 87 IPR002160 GO:0004866
Car13g00794 203 PRINTS Soybean trypsin inhibitor (Kunitz-type) signature 149 168 IPR002160 GO:0004866
Car13g00794 203 PRINTS Soybean trypsin inhibitor (Kunitz-type) signature 172 201 IPR002160 GO:0004866
Car13g00794 203 CDD STI 29 201 IPR002160 GO:0004866
Car13g00794 203 ProSitePatterns Soybean trypsin inhibitor (Kunitz) protease inhibitors family signature. 30 46 IPR002160 GO:0004866
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00794 - - - csv:101207401 341.273
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g01057 Car-Chr12:10375726 Car13g00794 Car-Chr13:8793957 7.82E-20 dispersed
Car13g00794 Car-Chr13:8793957 Car05g01087 Car-Chr5:10412973 3.94E-29 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g941 . . . . . . . . . . . . . . . Cpe20g00182 . . . . . . . . . . . . . . . . . . . . . Chy12g01355 Cme12g01786 . . . . . . . . . . . Cma13g00957 . Car13g00794 . . . . . . . . . . Cla01g01457 Cam01g1524 Cec01g1565 Cco01g1610 Clacu01g1548 Cmu01g1438 Cre01g1360 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002445 5 4 0 5 2 1 1 1 1 1 1 1 1 3 3 0 1 2 1 1 1 2 1 3 8 2 1 1 1 6 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car13g00794 Car_Chr13 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0