Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00812 ATGAGTCCGGAGCGGTTCGATCCGGACACTTACGGCGGAAATTACAACGGTTACGCCGGCGACATATGGAGTTTGGGGCTTACTCTTCTGGAGCTCTATTTAGGTCATTTTCCTTTCCTACCGCCTGGTCAGAGACCAGATTGGGCGACTCTGATGTGTGCGATTTGCTTCGGCGAGCCGCCGACGTTGCCGGAGGATGCGTCGGAGGACTTTCGGAGCTTCGTCGAGTGTTGCTTGCAGAAGGAATCGAGCAAGAGGTGGACGGTGGCGCAGTTGTTGACACATCCATTTGTGTGCAAGGAATCGAGATCTGATCGGTGA 321 54.52 MSPERFDPDTYGGNYNGYAGDIWSLGLTLLELYLGHFPFLPPGQRPDWATLMCAICFGEPPTLPEDASEDFRSFVECCLQKESSKRWTVAQLLTHPFVCKESRSDR 106
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8898235 8898555 + Carg04860-RA Car13g00812 159729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00812 106 Pfam Protein kinase domain 1 98 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car13g00812 106 ProSiteProfiles Protein kinase domain profile. 1 98 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car13g00812 Car-Chr13:8898235 Car14g01085 Car-Chr14:9531660 3.12E-38 dispersed
Car13g00812 Car-Chr13:8898235 Car18g00075 Car-Chr18:394422 1.79E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89289 PF00069 Pkinase 1.20E-12 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00812 K20604 - qsu:112004321 206.453