Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00813 ATGGCGTCGTTGGGCTTTACCCAGATCAGAACTACAAACCCAATGTCCGAGCTCGCGCTGAATCGGTCTCGGATGCGTTTGACTCGTCGAAATAGAGTTGGGTTCAGAGTGGTCGCCGCCGGCGAAGGTCAGGCGGAGCCTGATCTCAGTGTGACGGTTAATGGATTGCACATGCCTAACCCGTTTGTAATTGGGTCGGGTCCGCCGGGAACTAACTATACGGTTATGAAGAGGGCATTTGATGAAGGTTGGGGCGCTGTGATTGCCAAAACTGTGTCACTAGATGCAGCCAAAGTAATAAATGTAACGCCTAGATATGCCCGGCTTCGAGCAGATTCAAACGGCTCTGCAAAAGGGCAGATCATTGGGTGGGAGAACATTGAATTGATAAGCGACAGACCCCTTGAAACTATGTTGAGAGAGTTTAAGCAATTGAAGGAGGAGTATCCTGATAGGATTCTCATTGCTTCAATAATGGAGGAGTATAACAAAGCTGCTTGGGAAGAACTTATCGATCGAGTCGAACAAACCGGAGTTGATGCATTTGAAATCAACTTCTCGTGCCCTCATGGCATGCCCGAACGGAGAATGGGCGCTGCGGTCGGGCAAGATTGTGCGCTTTTGGAAGAGGTTTGTGGATGGATAAATGCTAAAGCTACAATCCCTGTCTGGGCTAAAATGACTCCCAATATCACTGATATTTCACAGCCTGCTAGGGTGGCTCTGAAATCGGGTTGCGAGGGGATAGCGGCTATCAACACGATCATGAGTGTAATGGGAATCGATCTCAAGACGTTACGCCCCGAGCCTTGTGTTGAGGGGTACTCAACTCCAGGAGGCTACTCTTCCAAGGCAGTTCATCCTATTGCTCTTGGTAAAGTGTTGAACATCGCAAAAATGATGAAGGCGGAATTTAATGATGCAGACTACTCTCTTTCTGGCATTGGAGGTGTCGAAACCGGTGGAGATGCTGCCGAGTTTATTCTACTCGGAGCAAACACTGTTCAGGTGTGCACGGGAGTGATGATGCATGGTTATGGCCTCGTTAAGAAACTCTGTGCTGAGCTGAAGGACTTCATGAAACTTCACAACTTCTCATCCATTGAAGATTTCAGAGGGGCTTCCCTTCCATACTTCACGACGCACACGGATTTGGTTCGGAGGCAGCGGGAAGCAATCGAGCAGAGAAAAGCTGTGAAGAAGGGTCTGCAATCTGATAAAGATTGGACTGGCGATGGCTTTGTCAAGGAAACTGAGAGTATGGTTTCAAACTGA 1275 48.47 MASLGFTQIRTTNPMSELALNRSRMRLTRRNRVGFRVVAAGEGQAEPDLSVTVNGLHMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVIAKTVSLDAAKVINVTPRYARLRADSNGSAKGQIIGWENIELISDRPLETMLREFKQLKEEYPDRILIASIMEEYNKAAWEELIDRVEQTGVDAFEINFSCPHGMPERRMGAAVGQDCALLEEVCGWINAKATIPVWAKMTPNITDISQPARVALKSGCEGIAAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSSKAVHPIALGKVLNIAKMMKAEFNDADYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKKLCAELKDFMKLHNFSSIEDFRGASLPYFTTHTDLVRRQREAIEQRKAVKKGLQSDKDWTGDGFVKETESMVSN 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8900907 8903732 + Carg04859-RA Car13g00813 159730

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00813 424 Pfam Dihydroorotate dehydrogenase 49 360 IPR005720 GO:0005737|GO:0016627
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00813 K00207 DPYD; dihydropyrimidine dehydrogenase (NADP+) [EC:1.3.1.2] - csv:101202899 795.808
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car13g00813 Car18g00074 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00933 Car-Chr10:7335094 Car13g00813 Car-Chr13:8900907 3.24E-07 transposed
Car13g00813 Car-Chr13:8900907 Car18g00074 Car-Chr18:387056 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g166 . . Bda06g00868 . . . . Bma12g01285 . Cmo18g00064 . . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g00733 Chy12g01380 Cme12g01813 . Blo15g00017 . . Bpe07g01089 . . . . . . . Cma18g00085 Car13g00813 Car18g00074 Cpe09g01105 . Bhi08g01329 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008474 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car13g00813 Car_Chr13 FPKM 0.0 0.0 1.75733 1.120954 14.688728 10.656199 14.440361 0.83556 1.325743 1.143997