Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00832 ATGCTGGAATTCAGTGGCGGAGAGCTGAATCAGAACCGAGGAAGGCGACCGCTGCTGCTGATTGTTCTGCAGGATGATAAGCAATCAGACTTTTTCACAGAGTATGGCGAAGCAAGCCGATACCAAATTCAAGAAGTTGTTGGGAAAGGAAGCTACGGAGTTGTTGGTTCTGCAATTGATAGCCAGACGGGTGAGAGAGTTGCCATCAAGAAAATTAATGATGTTTTTGAGCATGTATCTGATGCCATACGCATCCTCAGAGAAATTAAGCTTCTTCGGATGCTTCATCATCCGAATATTGTAGAGATAAAACATATTATGCTTCCTCCATCACAACGAGAATTCAAAGATATATATCTCGTTTTTGAGTTGATGAAGTCTGATCTTCACCATGTAATTAAGGCAAATAATGATCTTTCTCCCAAGCAGCATAAATACTTTTTGTACCAGCTTCTTAGTGGCCTAAAATATATACATGCAGGATTATGTTGCAACTCGTTGTATACCCCTGCTATAGATATATGGAGTATCGGATGTATATTTGCAGAAATTCTTACGGGAAAGCCCTTGTTTCCTGGAAAAAATGTGGTGCACCAATTAGATCTAATTACCGATCTGTTTGGCACTCCTGAAGCTGAGGCCATAGCGAAGATTCGAAATGAGAAGGCAAGGAGGTATCTAGGAAACATGCGTAAAAAACCACCAGTTCCATTCTCACGGAAGTTTCCCAATGTTGACCCATCGGCACTTCGTTTACTGGAACGTCTTCTGGCATTTGATCCCAAATGCCGTCCAACAGCTGCAGAGGCACTTTCTGATCCTTACTTCAATGGTATTGCGAAAACGGAACTTGAACCTTCTATTCAACCAATTTCAAAAATAGAGTTCGAGTTTGAGAGGAGGAGATTATCAAAAGATGACATTAGAGAGTTAATTTATGCAGAGATTTTAGAGTATCATCCCCAAATGCGTGAGGAGTGTCTACACCCTGAAGATCAAACTACCTTTTTGTATCCAAGTGGCGTTGATCGATTTAGGCTTCAGTTTGCGCATCTGGAAGAGCACCATGTTAATGGTGAAAGAAGACTTCCACTTCAAAGGCAGAACATTTCTTTACCTCGCGAGCGGGTTAGTCCAACTGAGAACAACAACGATGCACATGACATTGATTTTCAAAGGGGGGAAGACAAGAGTGCTCATCTCTTCAAAAGTGCTAGCATTAGTGCATCGAGGTGTGTTGGGGTATTACCAAAGGAAAAGTCTGAGGCGGAAGAAACGAGTTCTGAAGTGAAAAATGAAGGAGTGGATGGGCTGTCTCAAAAGATTGCAGTCCTTCAGACTTAA 1344 41.89 MLEFSGGELNQNRGRRPLLLIVLQDDKQSDFFTEYGEASRYQIQEVVGKGSYGVVGSAIDSQTGERVAIKKINDVFEHVSDAIRILREIKLLRMLHHPNIVEIKHIMLPPSQREFKDIYLVFELMKSDLHHVIKANNDLSPKQHKYFLYQLLSGLKYIHAGLCCNSLYTPAIDIWSIGCIFAEILTGKPLFPGKNVVHQLDLITDLFGTPEAEAIAKIRNEKARRYLGNMRKKPPVPFSRKFPNVDPSALRLLERLLAFDPKCRPTAAEALSDPYFNGIAKTELEPSIQPISKIEFEFERRRLSKDDIRELIYAEILEYHPQMREECLHPEDQTTFLYPSGVDRFRLQFAHLEEHHVNGERRLPLQRQNISLPRERVSPTENNNDAHDIDFQRGEDKSAHLFKSASISASRCVGVLPKEKSEAEETSSEVKNEGVDGLSQKIAVLQT 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9009266 9013372 + Carg04840-RA Car13g00832 159749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00832 447 MobiDBLite consensus disorder prediction 417 447 - -
Car13g00832 447 Pfam Protein kinase domain 41 160 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car13g00832 447 Pfam Protein kinase domain 167 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car13g00832 447 ProSiteProfiles Protein kinase domain profile. 41 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car13g00832 447 MobiDBLite consensus disorder prediction 417 431 - -
Car13g00832 447 ProSitePatterns Protein kinases ATP-binding region signature. 47 71 IPR017441 GO:0005524
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car10g00306 Car13g00832 CCT
Car11g00281 Car13g00832 CCT
Car11g00281 Car13g00832 ECH
Car10g00306 Car13g00832 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car13g00832 Car-Chr13:9009266 Car08g01053 Car-Chr8:7204705 1.73E-180 dispersed
Car10g00306 Car-Chr10:1502928 Car13g00832 Car-Chr13:9009266 2.97E-178 wgd
Car11g00281 Car-Chr11:1535991 Car13g00832 Car-Chr13:9009266 0 wgd
Car13g00832 Car-Chr13:9009266 Car18g00057 Car-Chr18:284844 2.33E-153 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89292 PF00069 Pkinase 2.80E-24 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00832 - - bhj:120082540 703.36