Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00834 ATGGGCATAAAAGATCTCCTCAGATTCATGAAGCCCTACATCGAGCCCATTCACATCAAGAAATACGCGGGAAAACGTGTGGGTATCGATGCCTATTCGTGGCTGCACAAGGGAGCTTATTCGTGTAGTATGGAGATTTGCCTTAACTCTGATAGTGATAAGAAATGGCGATACTTAGACTACTGTATGCATAGAATCAATCTGCTTCGCCATTACAAGATAGTCCCAGTTGTTGTTTTTGATGGTGGGAATGTTCCATGTAAGAAAGCCACTGAGCAACAGAGGCACAGAAGAAGAGAGACAAACAGGGAATTAGCGATGGAGAAGTTGAAAGAAGGGAATGTTGGTGCTGCCTCTGAGCTTTTCCAGCGAGCGGTGAATATTACTCCCTTCATAGCAAACCAACTCATAAAGGCAAGTCTTCTTAGAGAACACAACATCGAATTTGTGGTTGCCCCTTATGAGGCTGATGCACAGTTGGCATATCTTTCCAGCCTCGGAACACAAAACGGAGGAATTGCGGCTGTGATTACAGAAGATAGTGACCTGATTGCATATGGTTGTAAAGCTACAATATTTAAGATGGATCGATACGGCAATGGGGAAGAGATGATTCTAGATAAGATTTTTGACTCGGCAGGCTGCACACCTTCCTTCAGATATTTTGATAAGGAATTGCTCACGGGTATGTGTGTCTTAGCTGGCTGTGATTTTCTTCCTTCTGTTCCTGGAATTGGCATTGCAAAGGCTTATGCCTTGGTCTCCAAGTATCGGAATTTGGAACGTGTTCTTTCTGTTTTGAAGCTTGAGAAACCGAAGAAAATGCCTGAAGATTACTTCAAACTTTTCAGGGAAGCTATGGCAGTTTTTCAGCATGCACAAATATATGATGCTGAAACGAGAAAGCTTAAACATATGAAACCGCTTCCTCTAGAGCTTCTGCAGTTCCTAGACGAAGAAATTGATTTCTTGGGACCAGATATGCCTCCTTCAATAGCTGCTTCAATAGCCGAAGGAAGGTTAAACCCCATAACAATGGAGGCCTTTGACTATCTCCCAAGTGAAGAACGTCGCCAAGACCTTGTACAAATCAAAAACAACGAAAGACTTCCAAGGTTCGAGGCAGCTGAGGCAGCTGAGGCATCTGCGAACGATAGCTGTTTTATGGTCTTCGTCTGTAAGGACAAAGAAAGACATATCCCGGATGAGAGAATTAAACCCGTAGTAGATGGCAGTAATTCTAAAGGAGAATTGGCACTTGAGAAGCTAAGCACCCCGTTGAAAGTTCAAACAAATGAAGACAAAAACGTTCTTGCTTACAAATCATTAAAGATTCCTGACAACAATCCATTCAAGAGAAGGAAAGGTGATGAACTGCACATGGATCTAGCGCAGAGTGTTGACGAAGAAGTTTTAGTCGTAAGTGAGGATGAGTGTGAGGAACCATCATGTGGGTCTCTAGATAATTTACTAAAATCTTCCAAGAAAAGAAAAATGAACAAAGCTCTCCCTGACCAAATGGATAATGTTTCTGAGACTTTGTCGGGGTTGACCCAAGAAGAGGATTTGGTGCTGTTAGAACTGACACCAGAATCCCAAAAGAGCGTAAGCTCAAACTCGAGCAGTGCCATTGGTAGAAAAAGAGTTGTAGGCAAGGAGAACAAGAGAAAAAGTAGCTGTAATAGTTCAATAACTCCAAAGAACAGTATATTGAACTTTTTCCGTAGAGTATGA 1734 42.27 MGIKDLLRFMKPYIEPIHIKKYAGKRVGIDAYSWLHKGAYSCSMEICLNSDSDKKWRYLDYCMHRINLLRHYKIVPVVVFDGGNVPCKKATEQQRHRRRETNRELAMEKLKEGNVGAASELFQRAVNITPFIANQLIKASLLREHNIEFVVAPYEADAQLAYLSSLGTQNGGIAAVITEDSDLIAYGCKATIFKMDRYGNGEEMILDKIFDSAGCTPSFRYFDKELLTGMCVLAGCDFLPSVPGIGIAKAYALVSKYRNLERVLSVLKLEKPKKMPEDYFKLFREAMAVFQHAQIYDAETRKLKHMKPLPLELLQFLDEEIDFLGPDMPPSIAASIAEGRLNPITMEAFDYLPSEERRQDLVQIKNNERLPRFEAAEAAEASANDSCFMVFVCKDKERHIPDERIKPVVDGSNSKGELALEKLSTPLKVQTNEDKNVLAYKSLKIPDNNPFKRRKGDELHMDLAQSVDEEVLVVSEDECEEPSCGSLDNLLKSSKKRKMNKALPDQMDNVSETLSGLTQEEDLVLLELTPESQKSVSSNSSSAIGRKRVVGKENKRKSSCNSSITPKNSILNFFRRV 577
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9017532 9021547 - Carg04838-RA Car13g00834 159751

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00834 577 Pfam XPG N-terminal domain 1 101 IPR006085 GO:0004518
Car13g00834 577 ProSitePatterns XPG protein signature 2. 146 160 IPR019974 GO:0016788
Car13g00834 577 Pfam XPG I-region 146 237 IPR006086 GO:0004518
Car13g00834 577 MobiDBLite consensus disorder prediction 529 563 - -
Car13g00834 577 MobiDBLite consensus disorder prediction 530 545 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00834 K10746 EXO1; exonuclease 1 [EC:3.1.-.-] - csv:101208542 873.618
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car13g00834 Car-Chr13:9017532 Car18g00417 Car-Chr18:2612441 1.55E-60 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g234 . . . . . . . . Cmo13g01036 . . . . . . Cpe20g00142 . . . . . . . . . . . . . . . Cone2ag0752 . . . Lsi02g00221 Csa01g00703 Chy12g01409 Cme12g01843 . . . . . Bpe15g00519 . . Sed01g1757 . . Cma13g01000 . Car13g00834 . . . Bhi08g01277 Tan05g2208 Cmetu12g1384 Lac10g0276 . . . Cla04g01060 Cam04g1103 Cec01g1617 Cco01g1663 Clacu04g1127 Cmu04g1111 Cre01g1413 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011036 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car13g00834 Car_Chr13 FPKM 0.201272 0.024085 0.0 0.138395 0.031164 0.01295 0.0 0.032595 0.12786 0.069864