Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00839 ATGTTGTACGATTCCATTCTTGCGAGGAGCTTTAGCAAGCATGAACAAAAGAAGATGGGTTATGGAGCTTTGATGGGTTGCTTGTTCATTGCATTTAGCTTCAGCATTATGCTCAAACCTCATCTGGGTCGCCATTTTCTAGCTTTGAATCTGAGGCTTTTTCCAAGAGCTCCAGGAATCAAAATGGCTGACATTGTTACAAAGAAGCCAACGCCAACATGCAATTTGATGGATTGGACAGACTTCTGCGACATTGATATGAATGTTAGAATTCATGGAGAATCTTCCTCAGTGATGTTTGCTTCAACCGACATGGAAGAACACTTAGAACGCAACAGCACTTGGAAAATCAAGCCATATGCTAGAAAACAAGACGCCAATGCAATGAAGAACACAAGAGAATGGTCTATAAAAGCAGTAAAAAGCCCCCAAAACTTGCCTCAATGCACACAAAATCATGGCGTTCCAGCCATTCTGTTCTCCCTTGGTGGATATGCAGGAAACCATTTCCATGACTTCACAGACGTGATCATTCCACTGTTCATAACAGCAAGAAAATTCAATGGAGAGGTCCAATTCCTCATAACTGATAGAAAATCTTGGTGGGTTTTAAAGTATCAAGCAATACTATCAAAGTTGTCGAACTATGATATCATTTACATTGACAAGGAGGCGCAAGTTCTTTGCTTTCCTCATGTCATTGTGGGGCTCAAACGTGACCCAAAAGAGCTTAGCATTGATTCAAACAACCATTCATTCTCCATGAAGGATTTCAAAGAGTTCTTGAGAAGTTCTTACTCGTTGAACAGAGGCAGAGCAATGGAAAACAGAGGAAGAGGCAGAGGAAGGAAAAAGAGGGAGATTAAGCCACGGCTTCTCATAGTTGCGAGGAGGAAAACAAGGTCATTTACGAACACAGGGGAGATCATCAAGATGGCTAAGAAACTGGGTTTTCAAGTGATTGTTACAGAGCCAGATGCTAACTTGAAGAAAGTTGCAGAAACTGTGAACTCTTGTGATGTGATGATGGGAGTTCATGGCGCTGGGCTTACCAACATTGTGTTTCTTCCTGAAAGGTCAGTTTTGATTCAGATTGTACCATTTGGAGGAGCAGAATGGGTATCCACAAGGTTCTTTGGAGAGCCATCGAAGGACATGGAATTGAAGTATTTGGGGTATGATATCAGTTTGAAAGAAAGCACGTTGATTCAGCAGTACCCTAAAGAACATGTGGTTTTGAGAGATCCTGTGGCTATCCAAAAACAGGGGTGGAGTGCTTTCAAGTCCATCTATTTTGATAACCAAAATGTGAAACTTGATATCAATAGATTTAGACCCACTTTGCTTAAAGCTCTTGAGCTTCTGCACCACAGTAGCTAG 1380 41.52 MLYDSILARSFSKHEQKKMGYGALMGCLFIAFSFSIMLKPHLGRHFLALNLRLFPRAPGIKMADIVTKKPTPTCNLMDWTDFCDIDMNVRIHGESSSVMFASTDMEEHLERNSTWKIKPYARKQDANAMKNTREWSIKAVKSPQNLPQCTQNHGVPAILFSLGGYAGNHFHDFTDVIIPLFITARKFNGEVQFLITDRKSWWVLKYQAILSKLSNYDIIYIDKEAQVLCFPHVIVGLKRDPKELSIDSNNHSFSMKDFKEFLRSSYSLNRGRAMENRGRGRGRKKREIKPRLLIVARRKTRSFTNTGEIIKMAKKLGFQVIVTEPDANLKKVAETVNSCDVMMGVHGAGLTNIVFLPERSVLIQIVPFGGAEWVSTRFFGEPSKDMELKYLGYDISLKESTLIQQYPKEHVVLRDPVAIQKQGWSAFKSIYFDNQNVKLDINRFRPTLLKALELLHHSS 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9044196 9045647 + Carg04833-RA Car13g00839 159756

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00839 459 Pfam Glycosyltransferase 61 269 362 IPR007657 GO:0016757
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00839 - - - cmax:111495750 899.042
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00043 Car-Chr3:514152 Car13g00839 Car-Chr13:9044196 6.76E-78 dispersed
Car06g00734 Car-Chr6:4767205 Car13g00839 Car-Chr13:9044196 1.56E-90 dispersed
Car13g00839 Car-Chr13:9044196 Car07g01280 Car-Chr7:7977348 1.85E-83 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g257 Blo04g00836 . . . . . . . Cmo13g01040 . . . . . . . . . . . . . . . . . . . . . . Cone2ag0745 . . Cone19ag0320 Lsi02g00218 . . . . . . . . Bpe15g00535 Bma03g00903 . Sed01g1752 . . Cma13g01004 . Car13g00839 . . . Bhi08g01270 Tan05g2217 Cmetu08g1322 Lac10g0272 Hepe07g2367 . . Cla04g01063 Cam04g1106 Cec01g1620 Cco01g1667 Clacu04g1131 Cmu04g1115 Cre01g1416 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012738 1 1 1 1 1 1 1 1 1 0 1 1 1 0 0 1 1 3 0 1 0 0 1 1 1 1 2 1 2 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car13g00839 Car_Chr13 FPKM 10.217647 11.142392 11.65327 11.943188 16.626806 19.884172 16.185038 22.081383 22.628227 21.334644