Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00846 ATGAAAACTTCCGTCCCTCTCTTCTTCTTCTTTTTCTTCTTCACAGTGGTGTGGTTTGATCTTCCGCTATGTTCCGCCGACGACGCCCACGAGGAATTCAAAGCTTGCAGTCTCTATTACAACTGCGGAGATTTGGTAAACGTCACGTATCCATTTTGGGGGAATGAGCGGCAGGAATTCTGCGGCCGCCGTGAATTCAAGCTCAATTGCAAACACAACAAAACCACTACGATCGAAATCAGTTCTATTGAGTTTCACGTTCTCAACATCAGCCGATCCAAACATACAATGACAATTGCAAGATCGGATCTCCGAACTGATTACTGCCCTAAAATCGAAACCAAAACGACGGCGATTGATTATCGTCTCTTCAAGTATACTTTGAACGATCTGAATCTCTCTGTCTGGTACGATTGCCCGCTGCTACCTGAAATTCTCGACAATTACAGATTCACGTGCGGATCGGAGGGGGAAATACGAGGGAGAGCGAATTACGCTTTCGAAACGGAAGCGCTGAATCGGAGTAGAAACATGAGCGAGTGTAGACTGAACATCGAAGTGACAATTACAAAAGAGGTATTCAAAGAAACACACGAGAACAGAACGATGGCGGTGGAGCAGGGTGTGAAAAGAGGGTTTGATGTGGAATACGGGGACTTCTACACGGTGGCGTGCGAGGGGTGCAAGGTATACGGCGGCAAGTGTGGAGCAAACGCCACCCATGAGTTTTACTGCATTTGTGGAGATGGAGATATCCATCCTTACGTTTGCAAGCCTCCTCCTCCTCCTCCTCCTCCTCCTGGTACGTACTTTATCTTCCATTGCATCAAATCTCCTAGAACCCCTTTTCTTTTTATCATCTTCTTCATCATCTTAACTCCCCAAACTCTGTCCTCAGACGAGAAGTTTGAAGCTTGTGCTCCAAAATCCTGTGGGAAAGGTCCGAATATCAGCTACCCTTTCCGGGTAGCTCATTCGCACAGCCCCTTCTGTGGACTCCCTACCTTTGATATCACCTGCAGACATGAATACCCAGTTATCAAAATTTCAGAAGAGGATTATATCATCAGAGAAATCTCCTATCAAACCCACTCTTTTCTTGTGGCAAATGCTGCGGTTTACGACCTCCAATGCCCTACTCCTCTTCATAACTTCACCCTCCACCGAACCCCATTCACTTACACTCCGGATCATATTGGCTTCTTCTTCTTTTACAACTGCACTTCTCTTCCTCCCAAGTTTAGCTACCCAATTCATTGTTCAAACACAACCAAACTCCATTCTTTTGCCGCTTTCCACGATGGATTTGTGGAGCTTATGAATTTCTCTGTCGATTCTTGTCAATCCTCGGTAGAGGTGCCTATAGACATTACTAATCAGGACGATGATTTCTCTGGGTTGTTGAGGAAGAGTTATTCCGATGTCTTGAAGATGGGTTTCACTCTAAATTGGAGTGCCCAAAATTGTAGCAATTGTGAGACAAGTGGTGGGCGATGTGGGTTTGAAAGCAACGAGTTTGTTTGCTTTTGTCCTGATGGACCTCATCCACAAACCTGCAAACAGGGTAACTTTCTAGGAAATAAATCTTGCTCTGGCTCTTGCTCGAATCTTAGCTCTGTTCTTCTATTTCTTTTGATAAACAATCTTTCCTAA 1653 45.01 MKTSVPLFFFFFFFTVVWFDLPLCSADDAHEEFKACSLYYNCGDLVNVTYPFWGNERQEFCGRREFKLNCKHNKTTTIEISSIEFHVLNISRSKHTMTIARSDLRTDYCPKIETKTTAIDYRLFKYTLNDLNLSVWYDCPLLPEILDNYRFTCGSEGEIRGRANYAFETEALNRSRNMSECRLNIEVTITKEVFKETHENRTMAVEQGVKRGFDVEYGDFYTVACEGCKVYGGKCGANATHEFYCICGDGDIHPYVCKPPPPPPPPPGTYFIFHCIKSPRTPFLFIIFFIILTPQTLSSDEKFEACAPKSCGKGPNISYPFRVAHSHSPFCGLPTFDITCRHEYPVIKISEEDYIIREISYQTHSFLVANAAVYDLQCPTPLHNFTLHRTPFTYTPDHIGFFFFYNCTSLPPKFSYPIHCSNTTKLHSFAAFHDGFVELMNFSVDSCQSSVEVPIDITNQDDDFSGLLRKSYSDVLKMGFTLNWSAQNCSNCETSGGRCGFESNEFVCFCPDGPHPQTCKQGNFLGNKSCSGSCSNLSSVLLFLLINNLS 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9077538 9080755 + Carg04826-RA Car13g00846 159763

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00846 550 Pfam Wall-associated receptor kinase C-terminal 153 250 IPR032872 -
Car13g00846 550 Pfam Wall-associated receptor kinase C-terminal 440 513 IPR032872 -
Car13g00846 550 Pfam Wall-associated receptor kinase galacturonan-binding 306 369 IPR025287 GO:0030247
Car13g00846 550 Pfam Wall-associated receptor kinase galacturonan-binding 36 101 IPR025287 GO:0030247
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00846 - - - cmos:111431361 539.265
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car10g00292 Car13g00846 CCT
Car11g00260 Car13g00846 CCT
Car10g00292 Car13g00846 ECH
Car11g00260 Car13g00846 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car13g00846 Car-Chr13:9077538 Car15g00057 Car-Chr15:398012 9.97E-24 dispersed
Car13g00846 Car-Chr13:9077538 Car13g00847 Car-Chr13:9080769 1.63E-58 tandem
Car11g00260 Car-Chr11:1441603 Car13g00846 Car-Chr13:9077538 7.78E-49 wgd
Car13g00846 Car-Chr13:9077538 Car18g00923 Car-Chr18:9990259 2.84E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g289 . . . Bda15g00513 . Bpe13g00359 Bma06g00049 . Cmo13g01055 . Cma10g00308 Cma11g00286 Car10g00292 Car11g00260 . . . . . . . . . . Cla06g01453 . . . . . . Cone11ag0305 Cone18ag1190 Cone2ag0439 Cone16ag0560 Lsi02g00194 Csa01g00680 . Cme12g01864 . . . . . Bpe15g00530 Bma03g00899 Bma08g00058 . Cmo10g00329 Cmo11g00288 Cma13g01013 . Car13g00846 . . . Bhi08g01255 . . . . . . Cla04g01079 . . . . . . Lsi06g01317 Csa01g00398 Chy02g02350 Cme02g01727
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000343 0 10 0 0 0 4 2 2 3 5 2 5 1 5 4 3 5 6 0 4 8 2 2 9 5 10 2 8 12 10 129
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car13g00846 Car_Chr13 FPKM 0.0 0.0 0.0 0.570198 0.828915 0.0 0.330251 0.0 0.0 0.0