Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00847 ATGGCAGGAGACAATGATGTTTGGAAGAAGTACGTCATAGGTTTTAGCTGTGGTTTTGGCGGCGTAACGATAATGAGCGTAGCCTTTTTCATCTGGTTTCGTTTGCACAAAAAGAAGCTTGCTCGTACTTATACTCCCTCCTCCTTTCTCCTACGAAACAATTCTAGTAATCTTCCCGGTACTGTTGCCGATCATCTTCACGGCGAACGAGCAAAACCCGGTGAGCTTCCATGGCATACAAGAGTGAGAGACATGATATGTGGAGTTGCAGAGTTGGCATTTCAATGCTTGCAGAGTGTGAAAGACACAAGGCCGACAATGTCGGAGGCGTTGGAAATTCTTAAGAACATAGAGAGTCAGCATAGTGGGCAAGGAAAGACAGAAGAAATAAACGTTTCAGGAGAGGAGGATGTGGTGGTGAAGGGTGACGTCACGGAAATGACACCTTCCCTCCCTCTCTTCCTCTTCTTCTTCTTCTTCACAATCGTGTGGTATGATCTTCCGCTATGTTTCGGCGACGGCACAGTCGATGAATTTAAAGCTTGCGATGTCTATTACAACTGCGGAGATTTTGTAAACATCACGTATCCGTTCTGGGGGAATGAACGGCCGGAATTTTGCGGGCGGCGAGAATTCGAGCTCAATTGCAAAGACAACAGAACCACCGCGATGGAAATCAGCTCTATAGAGTTTCACGTTCTGAACATCAGACGATCGAATCATACAATGACAATCGCAAGATCGGATCTCCGAACTGATTACTGCCCTAAAAACGAAATCAAAACAGCGACGATTGATTATCGTCTCTTCAAGTATTCTTTGAACGATCTGAATCTCTCTGTCTGGTACGATTGCCCGCTGCTACCTGGAATTCTCGACAATTACAGATTCACGTGCGGATTGGAGGAGGAAATAAGAGGGAGAGCGAATTACGCTTTCGAAACGGAAGCGCTGAATCGGAGTAGAAACATGAGCGAGTGTAGACTGAACATCGAAGTGACAATTACAAAAGAGGTATTCGAAGAAACACACAAGAACAGAACGATGGCGGTGGAGCAGGGTGTGAAAAGTTTTACTGCATTTGTGGAGATGGAGACATCCATCCTTACGTTTGCAGAAATATTCCACGCAAACACCCAAGCGATATACTTACTCTTGAATGAATCCAAAATCACTGATTTCTACAAAGGAAAGCTACCCGACGGCCGCGATGTGGCTGTGAAGCTTTTGAATGAATCCAAATCAAATGGCGAAGAATTTATGAACGAAGTTGTTAGCTTCGCCAAAACTTCCCATGTGAATATAGCCACACTCTTAGGTTTCTGCTACGAGAGGAACAAAAGAGCTTTGATTTATGATTATATGGCTAAAGGGTCCCTAGATAAGTACATTTCCAGCAACAGGATTCAAGAAAAGGGCGAGAAGTTGGATTGGAACACACTCTACAATATTGTCATCGGCGTGGCACGAGGCTTGGAGTACTTGCACCGTGGCTGCAACACAAGGATCTTGCACTTCGACATCAAGCCACACAACATACTCTTGGATGATGATTTCTGCCCCAAAATCACTGATTTCGGGCTGGCCAAGCAATGCAGGGCCAAGGAGAGTCATGTGTCGATGACATGTGTGAAGGGGACAATAGGGTTCATAGCGCCAGAGATAATATTTAGGAATCTTGGCAAAGTTTCTCATAAGTCTGATGTTTATAGTTATGGGATGTTGGTTCTTGAGATGGTGGGTGAGAGAAAGAGTCCCAATCAAGGAGTGGAGCAGAGCAGCGATGAGTACTTTCCTGATTGGATATATAAGGATCTTACACAAAGTGAAATTCATGGGGGCTGTTGGTGGGGAAACACAGAGGAAGAAGAAGAAATGGCAAGAAAAATGATCATTGTGGGGTTGTGTTGTATTCAGACATTGCCCGGCGACAGACCGTCGATGACCGATGCGGTTTCGATGTTGGAAGGCAGTGTTGATGGCTTACAAATTCCACCAAAACCTGACTTGTTCGGACCTCCTGCCGCTGATCTACTCCAAGTTGCTGCTTCTTCTTCTTCGACCTCCGACAACGCCCTCGATGCATTCAAAGATTGCGGTGTGAATTACAATTGTGGAGAATTGGTAAACATCACGTACCCCTTTTGGGGGAATGAGAGGCAGAGTTCTTGCGGCCGGAAAGAATTCAAACTCAACTGCAATAACAACCGAACCACCACAACTTACATCAATTCTCTGGAATACAACGTTCTGGAAATCAAGCAATTGAATAATACAATGAGGATCGCAAGATCAGACCTCTTCAATAATTACTGCCCACGAAATCAAATCCAAGTGGCGTCTATGGATCACCATCCGTTTGCGTATTCTGCCAGAAATCAGAACATCTCGGTGGGGTATAATTGCTCGGCGGATAACGAATTTCCCATTTCGGAATACAATTTTTCTTGCGGTGGGGAGTGGGAAAGGCGCGGGAGAGTGAACTATGCTTTTAAACCGTCGGCGGCGGTTTATTCAAAGCTTGTGGAGTGTGAAATGAAGATAGAAGTGATGGTTACGATAAAGGGGTTGAAGGAAGGTGTAAAGAACAGGAGGAGCTTGGTGGAGACGGCTGTGAAAGGAGGGTTCGAGGTGGAGTACGAGAATTGGTATAAGGGAGCGTGTGATTCATGCAATGGAAGTGGAGGCAATTGCGGCGGAAATGGGACGTACCCATTTTACTGCATTTGTAGAAACGGCGTTGCAAATCCTTATGCCTGTGATGCCACTGCTGCGCCTCCTCGCCCTCCTCACCCTGGTGCTGGCTCTGGAATTGGAGGCATTGTGATGATGAGTATAATCTTTTTCATCAGGCTTCGTATGCACAAAAAGAAGCATCAAAACTATTCTTGTGATCGTCCGATGAAGGAGCTCGAGAAAATAGAACATTACATGGCTCTATCTCTTTTCTCTTATCACGAACTTGTAAAAGCTACAGACAAATTCAACCCAGCAAACGAACTTGGAGATGGTGGCTTTGGCACTGCAAACTCCGAGATGGGCGTGAGGTCGCTGTTAAACGATTGTTTGAAAATAACTATAGAAAAGTTGAGCAATTCATGA 3102 45.23 MAGDNDVWKKYVIGFSCGFGGVTIMSVAFFIWFRLHKKKLARTYTPSSFLLRNNSSNLPGTVADHLHGERAKPGELPWHTRVRDMICGVAELAFQCLQSVKDTRPTMSEALEILKNIESQHSGQGKTEEINVSGEEDVVVKGDVTEMTPSLPLFLFFFFFTIVWYDLPLCFGDGTVDEFKACDVYYNCGDFVNITYPFWGNERPEFCGRREFELNCKDNRTTAMEISSIEFHVLNIRRSNHTMTIARSDLRTDYCPKNEIKTATIDYRLFKYSLNDLNLSVWYDCPLLPGILDNYRFTCGLEEEIRGRANYAFETEALNRSRNMSECRLNIEVTITKEVFEETHKNRTMAVEQGVKSFTAFVEMETSILTFAEIFHANTQAIYLLLNESKITDFYKGKLPDGRDVAVKLLNESKSNGEEFMNEVVSFAKTSHVNIATLLGFCYERNKRALIYDYMAKGSLDKYISSNRIQEKGEKLDWNTLYNIVIGVARGLEYLHRGCNTRILHFDIKPHNILLDDDFCPKITDFGLAKQCRAKESHVSMTCVKGTIGFIAPEIIFRNLGKVSHKSDVYSYGMLVLEMVGERKSPNQGVEQSSDEYFPDWIYKDLTQSEIHGGCWWGNTEEEEEMARKMIIVGLCCIQTLPGDRPSMTDAVSMLEGSVDGLQIPPKPDLFGPPAADLLQVAASSSSTSDNALDAFKDCGVNYNCGELVNITYPFWGNERQSSCGRKEFKLNCNNNRTTTTYINSLEYNVLEIKQLNNTMRIARSDLFNNYCPRNQIQVASMDHHPFAYSARNQNISVGYNCSADNEFPISEYNFSCGGEWERRGRVNYAFKPSAAVYSKLVECEMKIEVMVTIKGLKEGVKNRRSLVETAVKGGFEVEYENWYKGACDSCNGSGGNCGGNGTYPFYCICRNGVANPYACDATAAPPRPPHPGAGSGIGGIVMMSIIFFIRLRMHKKKHQNYSCDRPMKELEKIEHYMALSLFSYHELVKATDKFNPANELGDGGFGTANSEMGVRSLLNDCLKITIEKLSNS 1033
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9080769 9087982 + Carg04825-RA Car13g00847 159764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00847 1033 Pfam Wall-associated receptor kinase galacturonan-binding 704 764 IPR025287 GO:0030247
Car13g00847 1033 Pfam Wall-associated receptor kinase galacturonan-binding 182 247 IPR025287 GO:0030247
Car13g00847 1033 Pfam Wall-associated receptor kinase C-terminal 837 912 IPR032872 -
Car13g00847 1033 ProSiteProfiles Protein kinase domain profile. 380 659 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car13g00847 1033 ProSitePatterns Serine/Threonine protein kinases active-site signature. 503 515 IPR008271 GO:0004672|GO:0006468
Car13g00847 1033 Pfam Protein tyrosine and serine/threonine kinase 401 654 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car13g00847 Car-Chr13:9080769 Car09g00450 Car-Chr9:2513713 2.71E-64 dispersed
Car13g00846 Car-Chr13:9077538 Car13g00847 Car-Chr13:9080769 1.63E-58 tandem
Car13g00847 Car-Chr13:9080769 Car13g00848 Car-Chr13:9088495 6.20E-18 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89293 PF07714 PK_Tyr_Ser-Thr 3.00E-40 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00847 - - mcha:111008790 716.842