Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00850 ATGGCTAATGATCAGCTCAAGTATTCTCCATTACCCTCCAAGCTGCACCCCAATTCTCCATCTCACTTTTCTCAAATCTTCCGCTTTCTCTTCTTACTTATTGGCTTCTCCATTGGAATGGCCATTGGTTTGAACCTCAACAGCTTCTCCTCATTTAATATCTTTTCCTTTCCAGCTTCACCATCAACCCTCTTGTTTCTCCAACCACAACAACCTCCCTCGTCGCCCCCTCCATCTCAACCGCCGTCGCCATTGTTGCTGCCAGTACCATTGCCGTCTCCTGAGTTTTTCGACCCGAATGTAGAGCCACCTCTGATGCACAGAATGACAGATGATGAAGTCTTCTGGAGAGCATCCATGGTTCCACTGATCAAAGAATTCCCATATGAACGTGTGCCAAAAGTGGCTTTCATGTTTCTGATAAAGGGGCCGTTGCCTTTAGCTCCTTTGTGGGAAATGTTCTTCAAAGGCCATGAAAGGTTGTTTTCAATTTATGTGCACACCCATCCGTCCTATAATGTTTCTTCTTCTCTGCCTCCTGGCTCTGTCTTCCATGGAAGAAGAATCCCAAGCCAGCCGGTGCAATGGGGTAGACCCTCCATGATCGACGCCGAGCGCCGCCTTCTAGCCAACGCCCTTCTCGACTTCTCTAATGAAAGATTCATCCTACTCTCCGAAACCTGCATCCCTCTCTACAACTTCACCACTGTCTACAACTACCTCCTCAATTCCGACCACACCTTTGTTTCTTCCTACGATGATCCCCGAAAAATTGGCCGGGGTCGTTACAACCCTCAAATGTTTCCGACTGTGTCGATCGCCGACTGGCGAAAAGGATCGCAATGGTTTGAAGTAGATCGAACGGTGGCCGGCGAGATAATCTCCGACAAAACATATTACCCTGTTTTCCGGAACCATTGCGGGCCGCCGTGTTACATGGACGAGCATTATATTCCTACGTTGGTTAATATTGTTTTGCCGGACCGGAACTCCAACAGAACCGTTACTTGGGTTGATTGGTCGAAAAACGGTCCGCACCCCGGCAGATTTGGGAGGCGGGAAATCTCGGTCGAGCTTTTGAGCAAGGTGCGGTTCGGGTTTAATTGTACTTATAATGGAAACGACACCGTTTCCCTATGCTTTCTGTTTGCTCGGAAATTCATGCCGGATTCCTTACAACCTCTGCTGAAGATTTGGCCATCTCTGTTGGAAGGTTTGGTTTAA 1224 48.2 MANDQLKYSPLPSKLHPNSPSHFSQIFRFLFLLIGFSIGMAIGLNLNSFSSFNIFSFPASPSTLLFLQPQQPPSSPPPSQPPSPLLLPVPLPSPEFFDPNVEPPLMHRMTDDEVFWRASMVPLIKEFPYERVPKVAFMFLIKGPLPLAPLWEMFFKGHERLFSIYVHTHPSYNVSSSLPPGSVFHGRRIPSQPVQWGRPSMIDAERRLLANALLDFSNERFILLSETCIPLYNFTTVYNYLLNSDHTFVSSYDDPRKIGRGRYNPQMFPTVSIADWRKGSQWFEVDRTVAGEIISDKTYYPVFRNHCGPPCYMDEHYIPTLVNIVLPDRNSNRTVTWVDWSKNGPHPGRFGRREISVELLSKVRFGFNCTYNGNDTVSLCFLFARKFMPDSLQPLLKIWPSLLEGLV 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9102797 9104136 - Carg04822-RA Car13g00850 159767

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00850 407 Pfam Core-2/I-Branching enzyme 135 363 IPR003406 GO:0016020|GO:0016757
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00850 - - - csv:101207079 639.417
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car10g00291 Car13g00850 CCT
Car10g00291 Car13g00850 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car13g00850 Car-Chr13:9102797 Car14g01132 Car-Chr14:9982274 1.01E-117 dispersed
Car14g00724 Car-Chr14:4068216 Car13g00850 Car-Chr13:9102797 3.32E-143 transposed
Car15g00865 Car-Chr15:5099048 Car13g00850 Car-Chr13:9102797 1.59E-103 transposed
Car10g00291 Car-Chr10:1405147 Car13g00850 Car-Chr13:9102797 5.25E-132 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g296 . . . . . . . . . . Cma10g00306 . Car10g00291 . . Cpe20g00129 . . . . . . . . . . . . . . . . . Cone13ag0308 . Lsi02g00190 Csa01g00672 Chy12g01429 Cme12g01867 . . . . . . . . Sed08g2189 Cmo10g00327 . . . Car13g00850 . . . Bhi08g01242 Tan05g2258 Cmetu12g1703 Lac10g0246 Hepe07g2381 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002679 1 2 1 1 1 2 2 2 2 2 1 2 0 2 2 2 2 6 2 2 2 3 2 2 2 1 2 2 2 3 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car13g00850 Car_Chr13 FPKM 3.796137 1.411742 2.675551 2.512108 5.719316 3.50875 3.644814 1.813893 2.052148 2.502566