Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00855 ATGTGTTTTAGCTTCGAAATTCTATCATATCCGTACCATCTTCTCTCTCATTGGCTCTCTGGTTCTGGTGTGAACTTGACCGATCGTTGCCGGCGCAATCGCCGGAGTTCTGGCGGCGTTTTTTGGATGCTTTCGATGGGCCTTTTGTCTTCTATTTGTGCCTGCTTGAAGAAGCTTAAAGCAGCTAATTCAGCGAGTGCCGATGAAGCGGATGATGAAGATGTATCCACTGACATCTTCTTTGAACTCAGTGCTTTGCAAATTGCGACTAATTTCTTTTCTGAGGTGAATAAGCTGGGCCATGGAGGTTTTGGACCGGTGTACAAGGGGTTGATGCCAAATGGCCAACAAGTAGCAATCAAGAAACTATCGGTAGATTCTAGGCAAGGAGTGAGGCAATTTAGTAATGAAGTGAAACTTTTACTGCGAATTCAGCACCGAAATTTGGTCATTTTATTGGGCTGCTGTGTAGAAGGGCCTGAAAAGATGCTTGTATATGAGTTTCTGCCAAACAGAAGCCTCGATTATTTTATTTTTGGTATCGTGAGAGGTCTTCTCTATTTACATGAAGAGGCTCCTGCAAGAATTATACATAGAGATATCAAAGCCAGTAACGTATTATTAGATGAGAAGTTGAATCCGAAAATCTCTGATTTTGGATTAGCCCGGCTTTTTCCTGGGGATGATACACATTTGAATACATTTAAGATCGCTGGCACTTATGGCTATATGGCTCCTGAATATGCAATTCATGGATACTTGTCTGTGAAGAGTGACGTTTTCAGTTTTGGAATCTTGGTATTGGAGATTGTTAGTGGAAGAAAAAATCACGATGATCGGCTTGGTGCTCAACAGGCGGACCTATTGGGATATGCATGGTCGCTTTACCAAGATGGGAAGATTTTAGAATTAGCTGATGAGAGCCTAACAAAATGCAATGCAGATGAGGCAGCTATGTGCATTCAGTTGGGTTTGCTATGTTGTCAAGCGAGTGTTTCAGATAGGCCTGATATGAACACCATTCATCTCATGCTTTCCAGTGATTCATTCACGTTGCCGCGCCCCGGGAAACCTGGACTTCATGGTCGAGCAGCACCTCGGACAACTACCTCTACTTCTGCATTCACCAAGACAAATACTACTAGTACACAAACTGGCGTCACCAGAGCTTCTGCGAGTAGTAGTTTGGTAGAGGATTATTCAAGAAACTCCATGTCCATTTCTTCAATTGATGAAGGCAGGTGA 1245 43.13 MCFSFEILSYPYHLLSHWLSGSGVNLTDRCRRNRRSSGGVFWMLSMGLLSSICACLKKLKAANSASADEADDEDVSTDIFFELSALQIATNFFSEVNKLGHGGFGPVYKGLMPNGQQVAIKKLSVDSRQGVRQFSNEVKLLLRIQHRNLVILLGCCVEGPEKMLVYEFLPNRSLDYFIFGIVRGLLYLHEEAPARIIHRDIKASNVLLDEKLNPKISDFGLARLFPGDDTHLNTFKIAGTYGYMAPEYAIHGYLSVKSDVFSFGILVLEIVSGRKNHDDRLGAQQADLLGYAWSLYQDGKILELADESLTKCNADEAAMCIQLGLLCCQASVSDRPDMNTIHLMLSSDSFTLPRPGKPGLHGRAAPRTTTSTSAFTKTNTTSTQTGVTRASASSSLVEDYSRNSMSISSIDEGR 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9121046 9123603 + Carg04817-RA Car13g00855 159772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00855 414 ProSiteProfiles Protein kinase domain profile. 93 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car13g00855 414 MobiDBLite consensus disorder prediction 365 395 - -
Car13g00855 414 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Car13g00855 414 Pfam Protein kinase domain 94 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car13g00855 414 MobiDBLite consensus disorder prediction 352 395 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car13g00855 Car-Chr13:9121046 Car16g00582 Car-Chr16:3649898 3.55E-98 dispersed
Car13g00855 Car-Chr13:9121046 Car09g00824 Car-Chr9:5016207 3.84E-101 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89294 PF00069 Pkinase 1.10E-37 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00855 - - csv:101214463 611.298