Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00858 ATGGCTGAGTTCACTGCAAACTTCCACAGCTTAAAGCCTTCACCTTTTCCTCTAATGGACATGGATCCCAACCAAATTCCAAGTCTGAATTTTCTTGACAACATTCCTGTTCTGTTCAACGACAGTTTCTTTGGCAATCAAGCTGCTGTTCCTCCCAGATTCCCGGAAATTTGGGGAGAAAATTTCTGTCAAGCAAATCAGATCACTGCACCTGTTTTTGAGCCTACAAATCCATCTGGAAGTGACCTCCATGGAAGCAAGAAAAGAAGGCTTCAAAATGAGGTATCTGAGAGCAGCTCTGGAAACTCAACCCCTCAGACTAAAAATAACTCTGGAAAAGGAAAGCGCTCGAAAAAAGGCGACGAAAACGACGGTGAGAAACCGAGGGAAGTGGTTCATGTTAGAGCCAAAAGAGGTCAAGCAACAGACAGTCACAGTATAGCAGAAAGGATAAGAAGAGGAAAAATCAATGAAAGATTGAGATGTTTGCAAGACATTGTCCCTGGATGCTACAAGACAATGGGAATGGCAGTGATGTTGGATGAGATAATCAATTATGTGCAGTCTTTGCAGAATCAAGTTGAGTTTCTTTCTATGAAACTCACAGCTGCAAGCTCCTATTATGACTTCAACTCAGACTCAGATACTGCAGATAGATTGAAGGGAAAGGAAATGAGAGAAGGAAATGGAGGATTATTGGTTGCACCAACTGAAGATGGTCCCTTTGACATGAGCTTTGGTTCTTATTCCACAGCAATATGA 762 42.13 MAEFTANFHSLKPSPFPLMDMDPNQIPSLNFLDNIPVLFNDSFFGNQAAVPPRFPEIWGENFCQANQITAPVFEPTNPSGSDLHGSKKRRLQNEVSESSSGNSTPQTKNNSGKGKRSKKGDENDGEKPREVVHVRAKRGQATDSHSIAERIRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASSYYDFNSDSDTADRLKGKEMREGNGGLLVAPTEDGPFDMSFGSYSTAI 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9133842 9135828 + Carg04814-RA Car13g00858 159775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00858 253 MobiDBLite consensus disorder prediction 114 150 - -
Car13g00858 253 Pfam Helix-loop-helix DNA-binding domain 144 191 IPR011598 GO:0046983
Car13g00858 253 MobiDBLite consensus disorder prediction 71 150 - -
Car13g00858 253 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 140 190 IPR011598 GO:0046983
Car13g00858 253 MobiDBLite consensus disorder prediction 95 111 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car11g00253 Car13g00858 CCT
Car10g00215 Car13g00858 CCT
Car10g00215 Car13g00858 ECH
Car11g00253 Car13g00858 ECH
Car13g00858 Car18g00037 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car13g00858 Car-Chr13:9133842 Car14g00749 Car-Chr14:4193042 1.84E-45 dispersed
Car10g00215 Car-Chr10:1031717 Car13g00858 Car-Chr13:9133842 5.29E-69 wgd
Car11g00253 Car-Chr11:1404661 Car13g00858 Car-Chr13:9133842 1.39E-72 wgd
Car13g00858 Car-Chr13:9133842 Car18g00037 Car-Chr18:164214 3.93E-94 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4569 PF00010 HLH 2.50E-05 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00858 - - csv:101213736 387.882