Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00866 ATGGCTCGGATCTTTGAGTATTTTGTGGTTTGTGGGATCGGGCCGGAGATTCGGACTCTAGATGGGAACAAGGGATTTCATGGATTCAGTCACTTGTATCTAGCGTCTCTTCTTGACCAGTATCCTCCTTCCAATCATTCTCTTTATCCTCCTCCACCACCTCAGCTCGCAACGTGTGTTCTACCAGCTGGGGTAGAGTTTTTTTCATCGGGCTTTGATTCCAGTGACGCCTCCACTTTTCCGCGGAGTTATCCGATTGTTTTGACTGAGGGCGATGGGTCAAAAATTTATGTCAGTTGCATTGCTTTTAGAGACCCTGTTAGTGAGGATATTGCCGAAGCCTACCGCCTTCCACCAAATTCTTATGCTGATAAATGTATCTGTATTGTTTCTCGTTCACCCAGCTTCCATGTCCTTAAAGATGCGCTGGAGGAATTATTTGCTTTGTGCTTCTCCAGCAGTGGAAGTAGCAAGCCTCTGTGGGACATCATAGCATTCATGATCTCCAATGTACCTCTGCCGACTCCTGGGAAGGAACGGATTTTGTTTGGCATTGAGAATTGTCTTCTTTCCGTTCAGGCTCCACCAAAGGATGGGCTTCCCCATGCCGATATTTCGTTTCAGCCGCTTATGCAGTGCTTGGATTTGGAAAATTTAATCAAACTTTTCACTGCCGTCTTGCTGGAGAGGAGGATTCTTCTTCGATCAAACAAGTATTCACTTTTAACTCTTGTATCAGAAGCCATTTGTCATTTAATATATCCATTTAGATGGCAGCATGTCTACATTCCGTTACTCTTTTTCAGTGGAGTAGACTATATTGATGCTCCCACACCGTATATGATGGGTCTTCATTCCGGCGTTGATACATCCTATCTGGCAATGGATGGTGTTGTTGTAGTGGACCTTGAGTATAATTGTATCACAACCACTGAGGACATACCCCCTATTCCAGAACCAGAGCTCGGATCTTTGCGTAGCGAGCTGATGAAATTATTATATCCCAATGTTGTCAGCATAGATCAAATGAGGTCTGATTTGCGTAGCTCGTGTGAGCAGTACCCTAGAGGTATCTGCAAGCCTTGGGGAGAAGACCATGACCTTCAGCTTAGGTTGATATTTTTGAAATTCTTTGCATCACTCTTAAGTGGCTATCGCAATTTTATAGAAAACAGTGAGACAGATGCCTTCAATACACAAGCATTCTTGAAGAAGCGTTCACGATCAACTAATCAACCAGAAGATCCTATGATAACTCAGTTCCTGGAGTCCCAAGGGTTCTTAGACTATCTAGAGAGATGCATAAGTTCTGATGAAAGTAATATCAACATTCTTGACAAGTTACAAGATGCAATTGGGAGGGGTCAAAATCCTCTTTCAATTCTTCCGTCCTCATTGGCTGAACCTGAGATCATAACAATTTCTGACCCTGATATGGGATCATCAGGTTCTGGTGCGAAGTACACTTATGATAGATTTCCTTCAAACGTCAGAACTGAGGAGCAGGAAGAAAAGAGACAACAAATACTAGCAGCAGTGCGTGGAGCTTTTGAATATTCTGGAAAGCACAACCCTAATTCACCTTCTATGCTGATGGGCAGGGATCCGAAAGCACCAAGCCTCAGTCCAATGGAGAGGGCTGCCGAAAGAGAGCGCATGGTTTTGGACATAAAAGTCAAACTACAGGGTCTCTGGCTACGTCTTCTGAAACTGGGTGCAACTGATGATCCTCTTTCTTCTTTTGAATATGGCACTATTCTCGCTTTGATCGAGTCTGATGCAGAGGGAATTGGTGGTAGTGGGTTTGTTGAGTGTATTAGAGAGCACATAAATACTGGATGGCTTTGTCAGTTAACCGATGAACAGTTTATTGCTGTGAAAGAATTGCTAAAAACAGCAATCAGTCGTGCAACTTCACGAAATGATATATTGACAATTAGGGATGCCCTTGAAGTGTCTGGTGAAATATACAAGAAAGACCCTAATAATGTTCCTGATTACATCCAACGCCATCTTATTTCTTTATCTATATGGGAGGAGTTAAGGTTTTGGGAAGGTTATTTTGATTATTTGATGGAACAGTCTTCAAATAAATCCGCCAATTATACATCTCTGGTTTCTGCACAGCTAATTGTTATGGCATCGCATATGGCTGGACTTGGGCTTCCTGACATCGATGCTTGGTACATGATTGAGACAATTGCGGAGAAAAACAGCATAGGATACAAACAACTTATAAAGCTTCGAGGTTTCTTATCCCATATCCAGCAGCTGCGCATTAGTTATTGGGGACTCTCTGCTGTTAAGTCTCAATCCACATCTGCCCATGCAACGCCATCTCCGCATCCCAAAGATGGATCTGATCAGAATCAGCAGCCTGCTGAGGCTTCTGTTGTTGGAAGAAGCTGGGTTCAGAGCATGTTCAGCAGGGACACATCTGCAAGGATTAACTTGGGTCGTAGTGGCCGTTGGACTGCTGATGTCCCGACCGAGAGTGGTACTTCTCAAAGACAAGATTTACCCTCGGCTGGGCAGAAAAAAGTTCAAAGCAATATTCGCGTTCTTAGGGGTCATAGTGGAGCTGTGACAGCACTTCATTGTGTTTCAAAAAGGGAGGTGTGGGACTTGGTGGGAGACCGTGAGGATGCAGGTTTCTTCATTAGTGGAAGCACAGACTGCTTGGTCAAGATATGGGATCCAAGTCTTCGTGGGTCTGAACTGCGAGCAACTTTAAAGGGTCACACAGGACCTGTTCGTGCGATTAATTCTGATAGAGGAAAAGTAGTTTCTGGGTCTGATGATCACTCAGTTATTGTATGGGATAAGCAAACAACCCAGCTTCTAGAAGAGCTGAAAGGCCACGATGCACAGGTCAGTTGTGTGCGTATGCTATCAGGTGAACGTGTCCTTACCGCTGCGCATGATGGAACCGTGAAGATGTGGGATGTCAGAACTGATACTTGTGTAGCAACTGTTGGTCGTTGCTCTAGTGCAGTTATATGCATGGAATATGATGACTCTACGGGGATATTGGCTGCTGGTGGTAGAGATACAATAGCAAATATCTGGGACATCCGTGCTGGCCGGCAAATGCACAAGCTCTTAGGTCATACGAAATGGATACGCTCAATAAGAATGGTAGGAGACACTATTGTTACTGGTAGTGATGATTGGACCGCTAGACTGTGGTCTGTTTCTCGAGGAGCATGTGATGCTGTTCTAGCATGCCATGCTGGCCCAATATTGGCCGTAGAGTACTCTACACTGGATAAAGGAATAATAACTGGTTCATCTGATGGACTTCTTCGTTTTTGGGAAAACGAGGATGGAGGTATTAGATGTGTGAAGAATGTCACCATTCATAGTGCTGCCATACTGTCCATCAGTGCTGGGGAACATTGGTTAGGAATTGGAGCGGCAGATAACTCTATGTCCCTATTTCATCGGCCACAAGAGAGACTCGGTGGCTTCTCTAACACGGGTGCAAAAATGGCTGGGTGGCAACTGTACAGAACCCCACAAAAGACTGCAGCCATGGTACGATGCGCATCTTCGGACCTCGAAAGGAAACGAATATGCACTGGTGGTCGTAATGGCCTTCTGAGGCTCTGGGAAGCAACTATCAACATCTGA 3633 44.7 MARIFEYFVVCGIGPEIRTLDGNKGFHGFSHLYLASLLDQYPPSNHSLYPPPPPQLATCVLPAGVEFFSSGFDSSDASTFPRSYPIVLTEGDGSKIYVSCIAFRDPVSEDIAEAYRLPPNSYADKCICIVSRSPSFHVLKDALEELFALCFSSSGSSKPLWDIIAFMISNVPLPTPGKERILFGIENCLLSVQAPPKDGLPHADISFQPLMQCLDLENLIKLFTAVLLERRILLRSNKYSLLTLVSEAICHLIYPFRWQHVYIPLLFFSGVDYIDAPTPYMMGLHSGVDTSYLAMDGVVVVDLEYNCITTTEDIPPIPEPELGSLRSELMKLLYPNVVSIDQMRSDLRSSCEQYPRGICKPWGEDHDLQLRLIFLKFFASLLSGYRNFIENSETDAFNTQAFLKKRSRSTNQPEDPMITQFLESQGFLDYLERCISSDESNINILDKLQDAIGRGQNPLSILPSSLAEPEIITISDPDMGSSGSGAKYTYDRFPSNVRTEEQEEKRQQILAAVRGAFEYSGKHNPNSPSMLMGRDPKAPSLSPMERAAERERMVLDIKVKLQGLWLRLLKLGATDDPLSSFEYGTILALIESDAEGIGGSGFVECIREHINTGWLCQLTDEQFIAVKELLKTAISRATSRNDILTIRDALEVSGEIYKKDPNNVPDYIQRHLISLSIWEELRFWEGYFDYLMEQSSNKSANYTSLVSAQLIVMASHMAGLGLPDIDAWYMIETIAEKNSIGYKQLIKLRGFLSHIQQLRISYWGLSAVKSQSTSAHATPSPHPKDGSDQNQQPAEASVVGRSWVQSMFSRDTSARINLGRSGRWTADVPTESGTSQRQDLPSAGQKKVQSNIRVLRGHSGAVTALHCVSKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTGPVRAINSDRGKVVSGSDDHSVIVWDKQTTQLLEELKGHDAQVSCVRMLSGERVLTAAHDGTVKMWDVRTDTCVATVGRCSSAVICMEYDDSTGILAAGGRDTIANIWDIRAGRQMHKLLGHTKWIRSIRMVGDTIVTGSDDWTARLWSVSRGACDAVLACHAGPILAVEYSTLDKGIITGSSDGLLRFWENEDGGIRCVKNVTIHSAAILSISAGEHWLGIGAADNSMSLFHRPQERLGGFSNTGAKMAGWQLYRTPQKTAAMVRCASSDLERKRICTGGRNGLLRLWEATINI 1210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9180097 9195518 + Carg04806-RA Car13g00866 159783

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00866 1210 Pfam uDENN domain 36 103 IPR005113 -
Car13g00866 1210 ProSiteProfiles Trp-Asp (WD) repeats profile. 1074 1106 IPR001680 GO:0005515
Car13g00866 1210 MobiDBLite consensus disorder prediction 827 847 - -
Car13g00866 1210 ProSiteProfiles Trp-Asp (WD) repeats profile. 911 950 IPR001680 GO:0005515
Car13g00866 1210 Pfam DENN (AEX-3) domain 123 304 IPR001194 -
Car13g00866 1210 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 951 985 - -
Car13g00866 1210 Pfam WD domain, G-beta repeat 909 941 IPR001680 GO:0005515
Car13g00866 1210 Pfam WD domain, G-beta repeat 850 899 IPR001680 GO:0005515
Car13g00866 1210 Pfam WD domain, G-beta repeat 1029 1064 IPR001680 GO:0005515
Car13g00866 1210 Pfam WD domain, G-beta repeat 946 982 IPR001680 GO:0005515
Car13g00866 1210 MobiDBLite consensus disorder prediction 773 796 - -
Car13g00866 1210 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1074 1106 - -
Car13g00866 1210 ProSiteProfiles Tripartite DENN domain profile. 19 441 IPR037516 -
Car13g00866 1210 MobiDBLite consensus disorder prediction 820 847 - -
Car13g00866 1210 ProSitePatterns Trp-Asp (WD) repeats signature. 969 983 IPR019775 -
Car13g00866 1210 ProSiteProfiles Trp-Asp (WD) repeats profile. 951 991 IPR001680 GO:0005515
Car13g00866 1210 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 911 941 - -
Car13g00866 1210 ProSiteProfiles Trp-Asp (WD) repeats profile. 1034 1073 IPR001680 GO:0005515
Car13g00866 1210 Pfam dDENN domain 397 447 IPR005112 -
Car13g00866 1210 ProSiteProfiles Trp-Asp (WD) repeats profile. 996 1033 IPR001680 GO:0005515
Car13g00866 1210 ProSitePatterns Trp-Asp (WD) repeats signature. 1011 1025 IPR019775 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00866 - - - csv:101212131 2255.71
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00288 Car-Chr8:1821913 Car13g00866 Car-Chr13:9180097 3.74E-06 dispersed
Car11g01066 Car-Chr11:8231521 Car13g00866 Car-Chr13:9180097 5.11E-11 dispersed
Car13g00866 Car-Chr13:9180097 Car04g01364 Car-Chr4:7906052 1.70E-13 dispersed
Car17g01263 Car-Chr17:9590205 Car13g00866 Car-Chr13:9180097 5.86E-10 dispersed
Car13g00866 Car-Chr13:9180097 Car13g00546 Car-Chr13:7400405 4.54E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g344 . . . . . Bpe13g00342 Bma06g00001 . Cmo13g01072 . . . . . . Cpe20g00113 . . . . . . . . . . . . . . . Cone2ag0645 . . . Lsi02g00171 Csa01g00654 Chy12g01446 Cme12g01886 . . . . . . . . Sed08g2171 . . Cma13g01032 . Car13g00866 . . . Bhi08g01221 Tan05g2280 Cmetu12g2040 Lac10g0223 Hepe07g2408 . . Cla04g01103 Cam04g1156 Cec01g1666 Cco01g1712 Clacu04g1183 Cmu04g1163 Cre01g1461 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012064 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car13g00866 Car_Chr13 FPKM 0.65 0.31265 0.0 0.361388 0.0 0.0 0.0 0.0 0.252152 0.0