Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00880 ATGGTTGCACTGGACGAGAAAGTTCCCTCTTCATCGGAGGTTGATGCAATGGACAAAAGGCGCAAGAGGAAGAGACCAAAGAAAAATCTTCCTTCAACGGCTGCTGAAGAATCGGAACCTCAAAATCCAATGAAAGCTGAAGAAGAAGGGGAAGGAGATGCTGAAGGTAATGTATCAGAGGAGAAAGTGAAAAAAGGTGAGAAGATGAACAAGAAGAAGAGGAAGACGAAAAAGAAGGGCGAGTTGGAGGAGGAAGGACATGAAACTGCTAATGATGGTGAGGGAGAGGATGGCGTCGATGGGAAAGTTGAGAAGGATGAGGAGAAAGTAAACGAGAAAAAGAAGGTTAAGACTGGTGGCTCAGGAATTATGAGTACAGTTTCATTTGATTCGCTTGAATTGTCGGAGAAAACTCTCCGGGCGATTAAAGACATTGGATTTCAGCATATGACTCAGATTCAAGCCAGAGCAATTCCACCTTTTCTGACTGGCAAAGATGTTCTTGGAGCCGCAAGGACTGGATCCGGGAAAACCCTTGCCTTTCTTATTCCAGCTGTTGAACTACTCCATCACATCAGCTTTACTCCTCGTAATGGAACTGGTGTTATCGTTATTTGCCCAACACGGGAGCTTGCTATGCAGACACATGATGTGGCAAAAGAGCTTCTCAAATATCATTCACAGACACTTGGCCTTGTTACTGGTGGTTCTAGCCGACAAGCTGAGGCAGATCGTATTACAAAGGGGGTCAATCTGTTAATAGCAACCCCTGGTCGACTTCTTGACCATCTTCAACATACCAAGAATTTTGTGTTTAAAAATTTGAAGTGCCTCATAATTGATGAAGCGGACAGGATATTGGAAACCAATTTTGAGGAGGAAATGAAACAGATTATAAAGCTCCTACCAAAGAATAGACAGACTGCTTTATTCTCAGCAACCCAAACTCAAAAGGTTGAAGATCTTGTTCGCCTGTCTTTTCAGTCGACTCCTATTTATATTGATGTAGATGATGGAAGAACCAAGGTCACCAATGAGGGGTTGCAACAAGGTTATTGTGTTGTGCCCAGTGCTAAAAGATTCGTTCTTCTATATTCCTTCTTGAAGAGAAATTTATCTAAGAAAATTATGGTCTTCTTCTCGTCTTGTAACTCTGTCAAATTCCATGCGGACCTTCTTAGATACATTAAGGTCGATTGCATGGATATTCATGGAAAACAAAAGCAGCAGAAGAGAACTTCTACCTTCTTTGCCTTCAACAAGGCTGAGACGGGGATCCTACTATGTACTGATGTTGCTGCACGTGGACTTGACATCCCCGCTGTTGATTGGATTGTGCAGTATGATCCTCCAGATGAACCCAAGGAATATATTCACAGAGTTGGTCGAACAGCTCGAGGCGAAGGTAGCAAAGGAAATGCCCTGCTTTTCTTGATTCCTGAAGAGCTTCAATTTCTTCGCTATTTAAAGGAAGCAAAAGTTCCTGTCAAAGAGTATGAGTTCAGTGATAAGAAACTAGCCAACGTGCAATCTCATCTGGAAAAGCTGGTTGGGAGCAATTATTATTTGAACAAGTCCGCTAAGGAAGCTTACAGATCCTATTTATTAGCTTACAATTCACACTCTATGAAAGATATTTTCAACGTCCACCGCCTTGATCTACAGGCGATTGCTGCTTCATTCTGCTTTTCCAACCCTCCAAAGGTCAACCTTAACATCGACAGCAGTGCCTCGAAATTCAGGAAGAAAACGCGCAAAGTAGAAGGGAGCAAAAACCGATTCAGTGAGAGCAACCCTTATGGGAGGAAGAATGGCGATGAGGATGAGAGACAATTTGTAAGATACTAA 1848 42.64 MVALDEKVPSSSEVDAMDKRRKRKRPKKNLPSTAAEESEPQNPMKAEEEGEGDAEGNVSEEKVKKGEKMNKKKRKTKKKGELEEEGHETANDGEGEDGVDGKVEKDEEKVNEKKKVKTGGSGIMSTVSFDSLELSEKTLRAIKDIGFQHMTQIQARAIPPFLTGKDVLGAARTGSGKTLAFLIPAVELLHHISFTPRNGTGVIVICPTRELAMQTHDVAKELLKYHSQTLGLVTGGSSRQAEADRITKGVNLLIATPGRLLDHLQHTKNFVFKNLKCLIIDEADRILETNFEEEMKQIIKLLPKNRQTALFSATQTQKVEDLVRLSFQSTPIYIDVDDGRTKVTNEGLQQGYCVVPSAKRFVLLYSFLKRNLSKKIMVFFSSCNSVKFHADLLRYIKVDCMDIHGKQKQQKRTSTFFAFNKAETGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGSKGNALLFLIPEELQFLRYLKEAKVPVKEYEFSDKKLANVQSHLEKLVGSNYYLNKSAKEAYRSYLLAYNSHSMKDIFNVHRLDLQAIAASFCFSNPPKVNLNIDSSASKFRKKTRKVEGSKNRFSESNPYGRKNGDEDERQFVRY 615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9269409 9274524 - Carg04792-RA Car13g00880 159797

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00880 615 MobiDBLite consensus disorder prediction 1 120 - -
Car13g00880 615 Pfam Domain of unknown function (DUF4217) 509 569 IPR025313 -
Car13g00880 615 Pfam DEAD/DEAH box helicase 151 322 IPR011545 GO:0003676|GO:0005524
Car13g00880 615 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 279 287 IPR000629 -
Car13g00880 615 MobiDBLite consensus disorder prediction 77 116 - -
Car13g00880 615 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 158 333 IPR014001 -
Car13g00880 615 MobiDBLite consensus disorder prediction 41 67 - -
Car13g00880 615 Pfam Helicase conserved C-terminal domain 363 467 IPR001650 -
Car13g00880 615 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 127 155 IPR014014 GO:0003724
Car13g00880 615 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 360 517 IPR001650 -
Car13g00880 615 MobiDBLite consensus disorder prediction 600 615 - -
Car13g00880 615 MobiDBLite consensus disorder prediction 582 615 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00880 K13179 DDX18, HAS1; ATP-dependent RNA helicase DDX18/HAS1 [EC:3.6.4.13] - csv:101222933 1001.89
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00124 Car-Chr4:650301 Car13g00880 Car-Chr13:9269409 1.41E-67 dispersed
Car04g00886 Car-Chr4:5097227 Car13g00880 Car-Chr13:9269409 1.69E-106 dispersed
Car05g01349 Car-Chr5:12150848 Car13g00880 Car-Chr13:9269409 8.22E-41 dispersed
Car11g00202 Car-Chr11:1162625 Car13g00880 Car-Chr13:9269409 2.16E-07 dispersed
Car13g00814 Car-Chr13:8905669 Car13g00880 Car-Chr13:9269409 0 dispersed
Car13g00880 Car-Chr13:9269409 Car06g00924 Car-Chr6:7169298 1.95E-57 dispersed
Car15g01094 Car-Chr15:8617391 Car13g00880 Car-Chr13:9269409 8.60E-58 dispersed
Car13g00880 Car-Chr13:9269409 Car15g00976 Car-Chr15:7217247 4.37E-73 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g378 . Blo16g00145 . . . Bpe13g00336 Bma06g00006 . Cmo13g01088 . . . . . . Cpe20g00101 . . . . . . . . . . . . . . . . . . . . Csa01g00641 Chy12g01461 Cme12g01901 . . . . . . . . . . . Cma13g01047 . Car13g00880 . . . Bhi08g01037 . . . . . . Cla04g01117 Cam04g1170 Cec01g1681 Cco01g1729 Clacu04g1198 Cmu04g1177 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003223 0 3 1 2 1 2 2 2 2 2 2 2 2 2 1 2 2 3 2 2 2 2 1 1 1 2 2 1 1 1 51
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car13g00880 Car_Chr13 FPKM 10.98066 11.174584 18.56756 18.291191 14.973145 16.750778 15.020711 7.394336 6.997391 7.489105