Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00882 ATGGGCGGTGGTAGAAGACGAAGGAAGCAGCATTTCAGAAGGATTCATGCCTTTCCTTGTGGTAGAGCATCATTCAAAGATGAACAGTCATTAATTGGAGGGCCAGGGTTCTCAAGGGTAGTTTACTGTAACGATCCAGATGGTTTTGAGGCGAGTCTTCTCAACTATGGAGGCAATTATGTCAAAACTTCAAAGTATACTATTGCTTCATTCTTCCCCAGATCCTTGTTTGAGCAATTCAGAAGGGTTGCCAATTTGTATTTCCTCCTTTGTGCTCTGCTTGCCTTTAGCCCTCTCTCGCCTTATTCGCCCATCAGTAATGTTCTTCCTCTTCTTCTTGTTATTGGTGTCACCATGGGCAAAGAGGGTGTTGAAGATTGGAGGCGAACCAAACAGGACATGGAGATGAATAACAGGATAGTGAAAGTACATATTCAAGAGGGTGAGTTTGTTGAGACTAAATGGATGGACTTGAAAGTTGGGGACGTGGTTAAGGTGGAGAAGGATGAATTCTTCCCTGCTGATCTCATTTTACTGTCGTCGAGTTACGAGGAAGCGATTTGCTATGTCGAGACGATGAATCTTGATGGCGAAACGAATTTGAAGCTAAAGAATGCATTAGAAGCAAGCTCGAACTTCCACGAGGATTCGAGCTTTAAGAATTTCAAGGCTGTAATAAAATGTGAAGACCCCAATGCAAATTTGTATTCCTTTGTGGGAAGTATGGAGCTTGAAGAACAGCAACACCCCCTCAGTCCTCAGCAGCTTCTTCTTCGTGACTCGAAGCTGCGGAACACGGATTTTATATACGGGGTCGTGATCTTCACGGGTCATGATACGAAGGTTATTCAGAACTCAACAGCTCCTCCTTCCAAGAGAAGCAAGATTGAGAAGAGGATGGATAAGATTGTGTTCTTCCTGTTTGCTGTTTTGGTTTTGATATCAATTGCTGGGTCGATTTTTTTCGGAGTTTCGACTAGGGACGATATAGAAAACGGAAGACCTACGAGATGGTACCTTAGGCCAGACGATACGACAATATATTACGATCCCAAAAATGCTCCAGCTGCGGCAATATTGCAGTTTTTGACAGCTCTGATGCTTTTTAGCTATTTGATTCCCATATCATTGTATGTGTCCATTGAAATTGTCAAAGTTCTGCAGAGTGTCTTCATCAACCAAGATCTTCACATGTACCATGAGGAAACTGATAAGCCAGCTCGTGCCCGTACCTCGAATTTGAATGAAGAGCTTGGCCAAGTTGACACCATTCTTTCTGATAAAACCGGGACATTGACCTGCAATTCAATGGAGTTCATCAAGTGTTCGGTGGGCGGGACTGCTTACGGACGAGGAATTACAGAAATAGAGAGAGCTCTTGCAAGACGAAAGGAATCAACTTTACCTGAAAATTTAGAGGCCAACATTGCACGTCTTAGCAGCGAAAAACCGTTCATTAAGGGGTTCAATTTCAAGGACGAAAGAATAATGGATGGTAATTGGGTGAACGAGCCTCGAGCCGATGTAATCCAGAAGTTCCTACAGCTTCTTGCTATCTGTCATACTGCATTGCCAGAAATTGATGAGGAAACTGGTAGCATTTCATATGAAGCTGAATCACCAGATGAGGCAGCTTTTGTGATTGCAGCCAGAGAATTTGGATTCGAGTTCTATGAACGGACTCAGACAAGCATTTCGTTGCGGGAGTTCGATCCAACCTCAGCCCGAAAAGTCGAAAGATCATATCAACTCCTGGATGTTTTGGAGTTTAATAGCACAAGAAAACGGATGTCTGTGATTGTAAGAGATGCACAGGGACAGCTACTACTACTCTGTAAAGGAGCTGACAGTGTTATGTTTGAAAGACTTGCAAAGAATGGAAGTGAGTTTGAAGAACAGACAAAGGTGCACATCAATGAGTACGCCGATGCCGGTTTAAGAACTTTGGTTCTAGCGTACCGTGAGCTGAAACAGGAGGAGTTTAATAAATTTCATCAAGAATTCATAAAAGCCAAGAACACAGTGAGCACGGATCGTGACGACACCATCGATCAGTTAACAGAAAGCATCGAGAAAGATTTGATTCTTCTTGGTGCTACAGCAGTTGAAGATAAACTTCAAAATGGGGTCCCTGAATGCATTGACAAGCTTGCTCAGGCTGGTATAAAAATATGGGTGCTGACTGGTGATAAAATGGAAACAGCCATCAACATTGGCTTTGCTTGTAGTTTACTTAGGCAAGGAATGAGGCAAATCACTATCAGCTCAGAGACTGTGGAAGGAAAAGCTCTAGACCAAGTTGAAGAGGTTCACAAATCCGCAGCTATCAAGGCGTTTAAGGAAAGCGTGACTCGACAAATAACCGACGCAAAAGCATTACTTGCATCTTCAAGCAAAACCCCGGAAGCGTTGGCTTTGATAATTGATGGAAAGTCGCTCACCTACGCTCTGGAGGACGATGTGAAGAACTTATTTCTGGAGCTTGCCATTGGCTGTGCTTCAGTGATCTGCTGCAGATCATCTCCTAAACAGAAAGCACAAGTTACCCAATTGGTTAAGGTCGAAACAGGTAGCACTACTCTAGCAGTCGGTGATGGTGCAAACGACGTCGGGATGCTTCAAGAAGCGGATATCGGGATTGGTATTAGCGGTGTAGAAGGGATGCAGGCAGTCATGTCGAGCGACATTGCCATAGCACAGTTTCGATATTTGGAACGGCTGCTCCTTGTGCATGGACATTGGTGTTACAGGAGAATCTCTTCCATGATATGCTACTTCTTCTACAAGAACATTGTTTTTGGGTTCACTCTCTTCTTCTTTGAGCTGTATGCATCATTCTCCGGCCAATCTGTATTCGATGACTGGTTCCTTTCGCTGTATAACGTCTTCTTTACGTCTCTCCCTGTGATCGCATTGGGAGTATTCGACCAGGACGTCTCATCCCGGCACTGTCTCAAGTTCCCACTTTTATACCAAGAAGGTGTCCAAAACGTGCTGTTTAGTTGGGTTCGAGTTATCGGTTGGGTGTTCAACGGGCTACTAAGTTCTATCATCATCTTCTTCTTTTGTGTCGGGGCAATCGAATATCAAGCTTTCCGCAGCAGTGGAGAGGTCGTCGGGTTGGAAATTCTGGGCGTCACCATGTACACTTGTGTCGTCTGGGTTGTAAACTGTCAAATGGCATTATCAATCAGTTACTTCACATACATTCAACATCTCTTCATCTGGGGCAGCATCATTCTCTGGTACTTATTCCTTATGGCATATGGAGCTATGAACCCAACCATATCAACCACTGCATTTCAGGTCTTCGTCGAGGCCTGCGCCCCGGCGCCATCGTTTTGGATCCTCACACTATTAGCTCTGGGAGCTTCCCTTCTCCCATACTTCATCTACGCATCCATCCAAATGCGATTCTTCCCAATGAATCATCAAATGATTCAATGGATAAAAGCCGATGGGCACGCGAACGACCCAGAATACTGTCAAGTAGTGAGACAACGATCGTTACGACATACAACCGTCGGTTACACAGCTCGGTTCAAAGCATCAAAGCATCTTAGAGAAATCCCAGAAAGCAACAACCATAGAAAGATCTGA 3600 44.28 MGGGRRRRKQHFRRIHAFPCGRASFKDEQSLIGGPGFSRVVYCNDPDGFEASLLNYGGNYVKTSKYTIASFFPRSLFEQFRRVANLYFLLCALLAFSPLSPYSPISNVLPLLLVIGVTMGKEGVEDWRRTKQDMEMNNRIVKVHIQEGEFVETKWMDLKVGDVVKVEKDEFFPADLILLSSSYEEAICYVETMNLDGETNLKLKNALEASSNFHEDSSFKNFKAVIKCEDPNANLYSFVGSMELEEQQHPLSPQQLLLRDSKLRNTDFIYGVVIFTGHDTKVIQNSTAPPSKRSKIEKRMDKIVFFLFAVLVLISIAGSIFFGVSTRDDIENGRPTRWYLRPDDTTIYYDPKNAPAAAILQFLTALMLFSYLIPISLYVSIEIVKVLQSVFINQDLHMYHEETDKPARARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSVGGTAYGRGITEIERALARRKESTLPENLEANIARLSSEKPFIKGFNFKDERIMDGNWVNEPRADVIQKFLQLLAICHTALPEIDEETGSISYEAESPDEAAFVIAAREFGFEFYERTQTSISLREFDPTSARKVERSYQLLDVLEFNSTRKRMSVIVRDAQGQLLLLCKGADSVMFERLAKNGSEFEEQTKVHINEYADAGLRTLVLAYRELKQEEFNKFHQEFIKAKNTVSTDRDDTIDQLTESIEKDLILLGATAVEDKLQNGVPECIDKLAQAGIKIWVLTGDKMETAINIGFACSLLRQGMRQITISSETVEGKALDQVEEVHKSAAIKAFKESVTRQITDAKALLASSSKTPEALALIIDGKSLTYALEDDVKNLFLELAIGCASVICCRSSPKQKAQVTQLVKVETGSTTLAVGDGANDVGMLQEADIGIGISGVEGMQAVMSSDIAIAQFRYLERLLLVHGHWCYRRISSMICYFFYKNIVFGFTLFFFELYASFSGQSVFDDWFLSLYNVFFTSLPVIALGVFDQDVSSRHCLKFPLLYQEGVQNVLFSWVRVIGWVFNGLLSSIIIFFFCVGAIEYQAFRSSGEVVGLEILGVTMYTCVVWVVNCQMALSISYFTYIQHLFIWGSIILWYLFLMAYGAMNPTISTTAFQVFVEACAPAPSFWILTLLALGASLLPYFIYASIQMRFFPMNHQMIQWIKADGHANDPEYCQVVRQRSLRHTTVGYTARFKASKHLREIPESNNHRKI 1199
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9281521 9286885 + Carg04790-RA Car13g00882 159799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00882 1199 Pfam E1-E2 ATPase 136 378 - -
Car13g00882 1199 Pfam Phospholipid-translocating ATPase N-terminal 41 106 IPR032631 -
Car13g00882 1199 Pfam Cation transport ATPase (P-type) 536 623 - -
Car13g00882 1199 ProSitePatterns E1-E2 ATPases phosphorylation site. 427 433 IPR018303 -
Car13g00882 1199 Pfam Phospholipid-translocating P-type ATPase C-terminal 891 1141 IPR032630 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car13g00882 Car18g00024 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00296 Car-Chr4:1642363 Car13g00882 Car-Chr13:9281521 0 dispersed
Car04g01653 Car-Chr4:9522969 Car13g00882 Car-Chr13:9281521 0 dispersed
Car13g00882 Car-Chr13:9281521 Car15g01283 Car-Chr15:10038789 0 dispersed
Car13g00882 Car-Chr13:9281521 Car18g00984 Car-Chr18:10348396 0 wgd
Car13g00882 Car-Chr13:9281521 Car18g00024 Car-Chr18:114729 0 wgd
Car13g00882 Car-Chr13:9281521 Car04g01603 Car-Chr4:9266211 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00882 K01530 K14802 csv:101209427 2182.14