Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00893 ATGGCTTGTTTCTGGGTTTGTTCTAGGCCACAACACAAAAAACCCATATCAGATTCTGTGGAGAATGTCCAAAAGAAGGAGCTTTTGAGGAGTGTTGTTAGTGGGGAAGAAGAGTTCAGCTCTGATAGCTCCAAAGCTTCGTCTGAAAATGGAAACAGAGTAATGGTGGTTGTGGATTGGAGCGTTGAGGCTGAAGGGGCGTTGGAATGGACGCTCTCCCATGCTGTTCGGAGTCGCGACACCATTGTTCTTGTTCATGTTCTCAAGAGTTTGAAGACTCAAGGTTTTGAGTTTGGGAATAAGGTGGATTCCACAAAGGAGGCCTATAAGCTTCTGTTTTCTATGAGAAACATGTGTTTAAAGAGAAGGCCTGAGGTGCAAGTAGAGATGGCATTACTAGAAGGGAAAAAAAGAGGTCCAATAATTGTGGAAGAAGCAAAGAAGCATAAACTCTCTCTTTTGGTACTTGGTCAAAGAAAGAGGCCGATTCTTCGGCGTCTATTGAAAAGATGGGCGACAGGACGCTATCGAAGGAGAAGGAAGAAGAAGACTTGTCGAGCAACGACGGAGTATTGCATTCAGAACTCATCTTGCATGACCATTGCAGTGAGGAAGAAGAGCAAAAAGATTGGAGGATATTTGATCACGACCAAACGTCACAAGAACTTCTGGCTCTTGGCTTGA 684 44.3 MACFWVCSRPQHKKPISDSVENVQKKELLRSVVSGEEEFSSDSSKASSENGNRVMVVVDWSVEAEGALEWTLSHAVRSRDTIVLVHVLKSLKTQGFEFGNKVDSTKEAYKLLFSMRNMCLKRRPEVQVEMALLEGKKRGPIIVEEAKKHKLSLLVLGQRKRPILRRLLKRWATGRYRRRRKKKTCRATTEYCIQNSSCMTIAVRKKSKKIGGYLITTKRHKNFWLLA 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9327725 9329402 - Carg04778-RA Car13g00893 159810

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00893 227 Pfam Universal stress protein family 53 204 IPR006016 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00893 - - - csv:101207475 336.65
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car11g00200 Car13g00893 CCT
Car11g00200 Car13g00893 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02285 Car-Chr4:18378455 Car13g00893 Car-Chr13:9327725 5.91E-30 dispersed
Car06g01106 Car-Chr6:8305404 Car13g00893 Car-Chr13:9327725 8.39E-24 dispersed
Car13g00893 Car-Chr13:9327725 Car15g00628 Car-Chr15:3489162 2.55E-19 dispersed
Car11g00200 Car-Chr11:1154975 Car13g00893 Car-Chr13:9327725 9.15E-70 wgd
Car13g00893 Car-Chr13:9327725 Car18g01011 Car-Chr18:10548340 8.67E-41 wgd
Car13g00893 Car-Chr13:9327725 Car04g01745 Car-Chr4:10002835 6.34E-55 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g436 . . . . . Bpe13g00318 . . Cmo13g01102 . . Cma11g00224 . Car11g00200 Sed08g2163 Cpe20g00090 . Bhi02g00072 Tan09g2012 Cmetu02g0670 . Hepe09g0289 . . Cla06g01526 Cam06g1683 Cec06g1745 Cco06g1743 Clacu06g1650 Cmu06g1597 Cre06g2408 . . . . Lsi02g00139 Csa01g00623 Chy12g01478 Cme12g01919 . . Bda11g01768 Bda14g00892 . Bpe15g00566 Bma03g00868 . Sed01g2281 . Cmo11g00227 Cma13g01058 . Car13g00893 . . . Bhi08g01057 Tan05g2333 Cmetu12g1433 Lac10g0185 Hepe07g2443 . . . . . . . . . Lsi06g01395 Csa01g00337 Chy02g02405 Cme02g01809
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002926 2 2 1 3 2 2 2 2 2 2 1 2 1 2 2 2 2 0 1 2 2 2 2 2 1 2 2 2 2 2 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car13g00893 Car_Chr13 FPKM 1.092191 2.02809 3.85996 3.195044 9.998803 9.076125 10.476969 1.862277 2.223771 2.457956