Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00915 ATGTTGTTTCAGATTCCCCGATTGACCAGCTCCCTCAGGGAGCCATTCGATGTCGACCAGGCGTATCTCCATCGCAAGCTCCTTCTTCAGAATCACAAACCGACCCCTTCTGTAACTTCATCTGGCGAGTCAGAGCTTGCACGGAGGATAGTGTATCAATGGGATGAAGCATCCTTTGAAGTTCGACAAGCCTATAAGCAGTTCATTGCGGGAGTTGTTGGATTGGTGGACAGAGAAGTACCATCGGAGGAGCTTGGTGAGGTAGCGCTGACTATTTATCGCCTTTTTGGAGAGCAAAAAGAAGAGAATGATCTCAACTGGACAGCTAAAAACAAAGAAGAACTGCAAAAGCTTATTGGCCATACAGTTTCAGACGCTAGGCTGCAGAAAGTTGTTTCTCTAGCTCAGAAACTATTTACTTTGCAGCCAAGGGATCATGCAACTACATTTCTGGCAGAGAAGCATGTTAATAAGGGTGACTCCGAAGTAGAGTTTGGCGCTGATCTCGTGTTTAGAGAACCTGCTAGGTTTATGGTGGATGTGTCACTGGAAAATTCAGACTTACTGGGCAAGGATTTTACTGCACCTACATTTTATGACAGACAACATGTGCATGATGATTCCATTAACTTTGATCTCTCTAATGAAAGAGGAAAGTTAAATTTGAGTTGGTTGAGGGATGCATGTGATGAGATAACCAGAAAAAGTACCTCACAACTTTCCACTGATGAACTTGCAATGGCTATTTGCCGAGTCCTTGATTCAGAAAAACCTGGCGAGGAGATAGCTGCAGATCTATTGGATCTTGTTGGTGATGGAGCATTTGAGTTTGTTCAAGATCTTATATCACACCGAAGGGAACTTGTGAATGATATTCATCACGGGTTAACAATAATAAAATCCGAAAAAACGACTTCAAGCTCTCAGTCACGAATGCCTAGCTATGGAACTCAGGTTACTGTTCAAACAGAGTCAGAAAGACAAATTGATAAGCTTCGACGTAAAGAGGAAAAGCGAAATAAACGAGGAATTGACTATGGTACTGATAGCGATTTCTCTGCTATAAGCTTTTCTTCTCTAGTTCAAGCAAGTCAAAGGAAAAGTCCATTTGACGATCTTATTGGTTCTGGTGAGGGCGCTAACTCCCTTACTGTTAGTGCCCTCCCTCAAGGAACACAAAGAAAGCATTTTAAGGGATATGAGGAGGTTATTATCCCCCCAATCCCAGCAGCACAAATGAAACCTGGAGAAAAGCTGATTGAAATAACGGAGTTGGATGATTTTGCTCAAGCTGCTTTTCGTGGATTCAAATACTTAAATCGTATACAGAGTCGCATTTTTGACACTGTTTATAACACCAATGAGAATATACTAGTCTGTGCTCCAACAGGAGCTGGGAAAACTAATATAGCCATGATCTCCATTCTCCACGAGATTTCACAGCATTTCAAGGATGGATATTTGCATAAAGATGAATTTAAGATAGTTTATGTTGCTCCTATGAAGGCGCTGGCTGCAGAGGTCACATCTACTTTTAGCCATCGCTTATCTCCCTTGAATGTTATTGTAAGAGAATTAACTGGAGACATGCAACTTTCGAAGAATGAACTTGAAGAAACTCAGATGATAGTGACAACACCTGAGAAATGGGATGTCATAACTCGCAAAAGCAGTGATATGTCACTGTCGATGTTAGTCAAACTCTTAATTATTGATGAGGTACATCTTCTAAATGATGACCGAGGGCCTGTAATTGAGGCACTAGTTGCACGAACTCTTCGTCAGGTGGAGTCAACACAATCAATGATACGTATTGTTGGCCTTTCAGCCACCTTGCCTAATTACTTAGAGGTTGCACAGTTTCTTAGAGTGAGTCCAGGATCAGGACTTTTCTTCTTTGATTCTAGCTATCGTCCCGTGCCTCTTGCACAACAATATATTGGTATCAGCGAGCACAACTTTGCAGCTCGCAATGAATTGTTAAATGAAATATGCTATAAGAAGGTTGTTGATTCATTGAAGCATGGGCATCAAGCAATGGTGTTTGTTCATTCCAGAAAGGACACAGCAAAAACAGCAGAGAAACTGGTCGAACTTGGCCGAAAGTATGATGATCTTGAGCTATTTAAGAATGATGCACACCCACAGTTTGGTATTATCAAGAAAGAAGTCATCAAATCCAGGAATAAAGATCTCGTAGAACTTTTTGATCATGGGATTGGTGTACATCATGCTGGAATGCTACGTTCTGATAGAGGTTTAACTGAAAAGCTTTTCTCTGATGGACTATTGAAGGTTCTTGTTTGTACAGCCACCTTAGCATGGGGTGTAAATCTTCCCGCTCATACAGTTGTTATAAAGGGCACCCAATTATATGATCCAAAAGCTGGTGGATGGCGAGATTTGGGTATGCTTGATGTCATGCAGATTTTTGGACGAGCTGGGAGACCTCAGTTTGACAAAAGTGGTGAAGGCATCATAATTACATCTCACGATAAACTTGCCCATTATTTGCGATTGCTCACAAGTCAGCTCCCTATAGAGAGTCAGTTTATTGGTTCTTTGAAAGATAATTTGAATGCGGAGGTTGCACTGGGTACTGTAACGAATGTAAAGGAAGCTTGTGCCTGGCTTGGATATACATATCTATTTATAAGAATGAGACTAAATCCTCTGGCATATGGTATTGGATGGGATGAGGTCATGGCCGATCCATCTTTGAGTTCAAAGCAAAGAGATCTCATAACAGATGCTGCACGTGCGCTTGACAAATCAAAGATGATGCGTTTTGATGAAAAAAGTGGTAACTTTTATTGTACAGAGCTGGGCCGCATTGCCAGCCACTTCTATATTCAGTATTCCAGTGTTGAGACGTATAATGAGATGTTGCGACGTCATATGAATGACAGTGAGATTATTGACATGGTTGCTCATTCTTCTGAGTTTGAAAATATTGTTGTTCGAGATGAGGAGCAGAGTGAGCTGGAGATGTCAGTACGAACATCATGTCCCTTAGAAGTTAAGGGTGGCCCATCAAATAAACATGGAAAAATTTCCATCCTTATTCAGTTGTACATTTCCAGAGGTTCCATCGATTCCTTCTCGCTAGTCTCTGATGCTGCTTATATAAGTGCTAGCTTGGCTCGAATTATGCGAGCTCTATTTGAAATATGTTTGAGAAGGGGTTGGTGTGAAATGACATTGTTCATGTTGGAATACTGCAAAGCTGTTGATCGTCGAATATGGCCACACCAACATCCTCTAAGACAATTTGACAAGGATCTTTCTTTAGATATATTGCGTAAGCTTGAGGAGCGAGAGGCCGACCTGGATCGTCTGCAAGAGATGCAGGAAAAAGACATAGGAGCACTGATCCGTTATGTACCTGGTGGAAGATTGGTTAAGCAGTATTTAGGATATTTTCCACTCATCCAGTTATCAGCAACTGTCAGTCCAATAACAAGAACAGTCCTAAAGGTTGAGGTGCTCATAACGGCCGATTTTACATGGAAAGATCGTTTTCATGGTGGTTCACAACGCTGGTGGATACTAGTTGAGGACACGGAGAATGACCACATCTATCACTCTGAACTTTTCACGCTGGCAAAGAAGAAAGCTAGAGAGCCTCAAAAGCTTTCCTTTACTGTCCCAATATTTGAGCCACATCCACCTCAATATTATATTCATGCCGTTTCTGACTCCTGGCTGCAAGCAGAAGCATTTTACACTATATCTTTCCAAAATTTAGCATTGCCGGAGGCCAGTACGTCACACACTGAGCTCCTAGATTTGAAACCTCTTCCAATAACTGCGCTTGGTAACAGAAATTACGAATCCTTGTATAAATTTTCACATTTTAATCCAATACAAACACAGATTTTTCATATGTTATATCATACAGATGATAACATTCTGTTGGGTGCTCCCACTGGGAGTGGAAAAACCATATCTGCTGAACTTGCTATGCTTCGCCTCTTCAATACTCAGCCTGATATGAAGGTTGTCTACATAGCACCTTTGAAGGCCATTGTTCGTGAAAGAATGAATGACTGGAAAAATTGTCTTGTTTCTCGGCTTTACAAAAAAATGGTTGAAATGACGGGAGATTATACCCCTGATTTGATGGCACTTTTGTCAGCTGATATTATAATATCAACCCCTGAAAAGTGGGATGGTATTAGTCGAAATTGGCATAGCCGAAGTTATGTTACAAAGGTTGGACTAATGATTTTGGATGAGATCCACTTATTGGGAGCAGATCGAGGACCCATTCTTGAGGTTATTGTTTCAAGGATGAGGTATATATCATCACAGACTGAGAGAAAAGTTAGATTTGTAGGCCTTTCAACTGCTTTAGCGAATGCAAGCAATTTGGGTGACTGGTTGGGTGTTGGAGAAAATGGACTTTTCAATTTCAAACCAAGCGTAAGGCCAGTGCCTCTTGAAGTTCATATCCAGGGATATCCTGGAAAGTTTTACTGCCCTAGGATGAACAGTATGAATAAACCAACTTATGCTGCCATCTGCACCCATTCCCCAACCAAGCCAGTTCTTATATTCGTCTCATCTCGTCGTCAGACAAGACTCACTGCATTGGATCTTATTCAGTTTGCAGCTTCAGATGAGCATCCAAGGCAATTTATTAATATGGCTGAAGAAGAGCTTCAGATGATCCTTAGTCAAGTTATTGATCAAAATCTCAGGCACACCTTGCAATTTGGTATCGGGCTACACCATGCAGGTCTAAATGATGGGGATAGGTCTATGGTTGAGGAGCTGTTTGCAAACAACAAAATACAGGTATTGGTTTGTACTAGCACATTGGCTTGGGGTGTGAACCTTCCTGCACATCTAGTTATTATCAAGGGAACAGAATATTATGATGGAAAATCCAAGAGATACGTTGATTTTCCAATCACAGATATTCTGCAAATGATGGGTCGTGCAGGTCGACCACAGTATGATCAACATGGAAAAGCAGTTATTCTTGTTCATGAACCCAAAAAGAGCTTTTATAAAAAGTTTTTGTACGAACCATTCCCTGTTGAGAGCAGTCTGAAGGAGCAGTTGCATGACCATATCAATGCTGAGATAGTTTCGGGCACCATTTGTCATAAAGAGGATGCAGTGCACTATCTTACCTGGACATATTTGTTTCGTAGGCTGATGGTAAATCCTGCTTACTATGGACTTGATAGCATGGAACCTGAAACTCTAAGTTCGTACTTATCTAGTTTAGTACAAAGTACATTTGAGGATCTTGAGGATAGTGGATGCATAAAGATGGATGAAAACAGTGTGGAGCCAACGATGCTGGGCTCAATAGCATCTCAGTATTACCTCAGCTACATTACTTTATCAATGTTTGGCTCAAATATAGGTCCAGATACGTCACTTGAAGTATTTTTGCATATCCTTTCTGCTGCCTCTGAATATGATGAGCTTCCTGTGCGGCATAATGAGGAAAATTACAATGCTGCTCTATCCGAGAGAGTTCGATATGCAGTGGACAAAGATCGACTTGATGATCCACATGTGAAGACAAATTTACTTTTTCAGGCACATTTTTCTCAGTTGGAATTACCAATCAGTGACTACATTACCGACTTAAAATCGGTGTTGGATCAAAGTATACGCATTATTCAGGCCATGATTGATATCTGTGCCAACAGTGGATGGTTGTCAAGCTCGATTACTTGCATGCGTCTGTTGCAAATGGTCATGCAGGGCTTGTGGTTTGATGTAGATTCTGCATTGTGGATGCTGCCATGCATGAACGATGACCTTGCAAGTTCACTTAAAAAATCGGGATATCTTACTCTGCAGCAACTGTTGGATCTTCCTAAGACAACTTTGCAAAATTTGATTGGAAACTTTCCTGCATCAAAATTATCTCAGGATTTGCAGAATTTTCCTCGTGTCCAAATGAAGATAAAACTCCAAAGGAGGGACGAGGATGTTGAAAAACCTCCCTCTCTTCACATAAGACTGGAGAAGATAAGTTCGAGGAAAAACCGATCCAGGGCATATGCACCACGCTTTCCCAAGATAAAAGATGAAGCATGGTGGCTCGTACTTGGTAACACTGCTACGTCGGAACTGTATGCTATAAAGAGAGTTTCTTTCTCTGATCGCCTGGTCACAACCATGCAGTTGCCTCCAAAAAGAACTGATTTCCAGGAAATGAAGTTGATTTTGGTCTCAGATTGTTATCTTGGTTATGAGCAAGAGTACTCCATTAAAGAAGTGATAAGTGGAAGCAGTTGA 6267 41.18 MLFQIPRLTSSLREPFDVDQAYLHRKLLLQNHKPTPSVTSSGESELARRIVYQWDEASFEVRQAYKQFIAGVVGLVDREVPSEELGEVALTIYRLFGEQKEENDLNWTAKNKEELQKLIGHTVSDARLQKVVSLAQKLFTLQPRDHATTFLAEKHVNKGDSEVEFGADLVFREPARFMVDVSLENSDLLGKDFTAPTFYDRQHVHDDSINFDLSNERGKLNLSWLRDACDEITRKSTSQLSTDELAMAICRVLDSEKPGEEIAADLLDLVGDGAFEFVQDLISHRRELVNDIHHGLTIIKSEKTTSSSQSRMPSYGTQVTVQTESERQIDKLRRKEEKRNKRGIDYGTDSDFSAISFSSLVQASQRKSPFDDLIGSGEGANSLTVSALPQGTQRKHFKGYEEVIIPPIPAAQMKPGEKLIEITELDDFAQAAFRGFKYLNRIQSRIFDTVYNTNENILVCAPTGAGKTNIAMISILHEISQHFKDGYLHKDEFKIVYVAPMKALAAEVTSTFSHRLSPLNVIVRELTGDMQLSKNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQVESTQSMIRIVGLSATLPNYLEVAQFLRVSPGSGLFFFDSSYRPVPLAQQYIGISEHNFAARNELLNEICYKKVVDSLKHGHQAMVFVHSRKDTAKTAEKLVELGRKYDDLELFKNDAHPQFGIIKKEVIKSRNKDLVELFDHGIGVHHAGMLRSDRGLTEKLFSDGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHDKLAHYLRLLTSQLPIESQFIGSLKDNLNAEVALGTVTNVKEACAWLGYTYLFIRMRLNPLAYGIGWDEVMADPSLSSKQRDLITDAARALDKSKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLRRHMNDSEIIDMVAHSSEFENIVVRDEEQSELEMSVRTSCPLEVKGGPSNKHGKISILIQLYISRGSIDSFSLVSDAAYISASLARIMRALFEICLRRGWCEMTLFMLEYCKAVDRRIWPHQHPLRQFDKDLSLDILRKLEEREADLDRLQEMQEKDIGALIRYVPGGRLVKQYLGYFPLIQLSATVSPITRTVLKVEVLITADFTWKDRFHGGSQRWWILVEDTENDHIYHSELFTLAKKKAREPQKLSFTVPIFEPHPPQYYIHAVSDSWLQAEAFYTISFQNLALPEASTSHTELLDLKPLPITALGNRNYESLYKFSHFNPIQTQIFHMLYHTDDNILLGAPTGSGKTISAELAMLRLFNTQPDMKVVYIAPLKAIVRERMNDWKNCLVSRLYKKMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRSYVTKVGLMILDEIHLLGADRGPILEVIVSRMRYISSQTERKVRFVGLSTALANASNLGDWLGVGENGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPTYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDEHPRQFINMAEEELQMILSQVIDQNLRHTLQFGIGLHHAGLNDGDRSMVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKSKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYEPFPVESSLKEQLHDHINAEIVSGTICHKEDAVHYLTWTYLFRRLMVNPAYYGLDSMEPETLSSYLSSLVQSTFEDLEDSGCIKMDENSVEPTMLGSIASQYYLSYITLSMFGSNIGPDTSLEVFLHILSAASEYDELPVRHNEENYNAALSERVRYAVDKDRLDDPHVKTNLLFQAHFSQLELPISDYITDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMRLLQMVMQGLWFDVDSALWMLPCMNDDLASSLKKSGYLTLQQLLDLPKTTLQNLIGNFPASKLSQDLQNFPRVQMKIKLQRRDEDVEKPPSLHIRLEKISSRKNRSRAYAPRFPKIKDEAWWLVLGNTATSELYAIKRVSFSDRLVTTMQLPPKRTDFQEMKLILVSDCYLGYEQEYSIKEVISGSS 2088
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9441699 9464592 + Carg04756-RA Car13g00915 159832

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00915 2088 MobiDBLite consensus disorder prediction 303 325 - -
Car13g00915 2088 MobiDBLite consensus disorder prediction 326 345 - -
Car13g00915 2088 Pfam Sec63 Brl domain 1769 2080 IPR004179 -
Car13g00915 2088 Pfam Sec63 Brl domain 939 1245 IPR004179 -
Car13g00915 2088 MobiDBLite consensus disorder prediction 303 345 - -
Car13g00915 2088 SMART AAA_5 453 797 IPR003593 -
Car13g00915 2088 SMART AAA_5 1300 1450 IPR003593 -
Car13g00915 2088 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1295 1470 IPR014001 -
Car13g00915 2088 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 448 630 IPR014001 -
Car13g00915 2088 Coils Coil 1100 1120 - -
Car13g00915 2088 Pfam DEAD/DEAH box helicase 441 614 IPR011545 GO:0003676|GO:0005524
Car13g00915 2088 Pfam DEAD/DEAH box helicase 1288 1453 IPR011545 GO:0003676|GO:0005524
Car13g00915 2088 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1524 1710 IPR001650 -
Car13g00915 2088 Pfam Helicase conserved C-terminal domain 671 816 IPR001650 -
Car13g00915 2088 Pfam Helicase conserved C-terminal domain 1558 1651 IPR001650 -
Car13g00915 2088 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 665 863 IPR001650 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00915 K18663 ASCC3; activating signal cointegrator complex subunit 3 [EC:5.6.2.4] - csv:101222457 3946.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01615 Car-Chr1:13239346 Car13g00915 Car-Chr13:9441699 0 dispersed
Car04g02596 Car-Chr4:20356301 Car13g00915 Car-Chr13:9441699 1.84E-76 dispersed
Car05g00549 Car-Chr5:3216285 Car13g00915 Car-Chr13:9441699 7.17E-27 dispersed
Car13g00915 Car-Chr13:9441699 Car17g00439 Car-Chr17:2948306 1.84E-09 dispersed
Car13g00915 Car-Chr13:9441699 Car16g00082 Car-Chr16:514685 1.65E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g647 . Blo16g00171 . . . Bpe13g00309 Bma06g00154 . Cmo13g01125 . . . . . . Cpe20g00069 . . . . . . . . . . . . . . . Cone2ag0807 . . . Lsi02g00115 Csa01g00593 Chy12g01505 Cme12g01949 . . Bda11g01720 . . . . . . . . Cma13g01078 . Car13g00915 . . . Bhi08g01095 . . . . . . Cla04g01159 Cam04g1218 Cec01g1729 Cco01g1775 Clacu04g1245 Cmu04g1224 Cre01g1520 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009577 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car13g00915 Car_Chr13 FPKM 0.999718 1.349328 9.063519 8.920583 6.542119 5.682137 6.992498 15.776701 14.732863 12.684279