Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00917 ATGCCCATCACTTCTTCTTTCATGTCAATTAATCGATTCCGTTTTTACTCAATATTATTTTTGTTGGCGGATATGAATCCTGATAAATTCACCCACAAGACTAACGAGGCACTTGCCGGAGCTCATGAATTGGCATTGAATTCCGGCCATGCTCAACTGACACCGCTCCATTTGGCGGTTGCTTTAATTTCTGATCCGAGTGGGATCTTGAGCCAAGCGATTGCTAGTTCCGGCGGCGACAATGCCCAAAAAGAAGTGGACACGGTTTTCAAGCGGGCGTTGAAGAAGCTCCCATCTCAATCCCCTGCACCTGATGTAGTACCGGCGAGTACGACTCTGATTAAGGTAATCCGAAGGGCACAAGCAGCGCAAAAATCACGAGGAGACACGCATTTAGCTGTCGATCAATTAGTTCTTGGTCTTCTTGAGGATTCTCAGATTGGGGATTTGCTTAAAGAAGCTGGTGTCACCACTGCGAAAGTTAAGTCCGAGGTCGAGAAACTCCGTGGAAAAGAAGGGAAGAAAGTGGAGAGTGCGTCGGGAGACTCAACGTTTCAAGCACTCAAAACATATGGGCGAGACCTGGTAGAACAAGCGGGGAAACTCGACCCAGTTATTGGCCGAGATGAGGAAATTCGTAGAGTGGTGAGGATTCTATCGAGAAGAACTAAGAACAACCCAGTTCTTATAGGGGAGCCTGGCGTTGGTAAAACTGCAGTGGTTGAAGGATTAGCGCAGAGAATCGTAAGAGGAGATGTACCAAGTAATCTTGCTGATGTGAGGCTCATAGCTTTGGATATGGGCGCTTTGGTCGCGGGGGCTAAGTACAGGGGAGAATTTGAAGAGAGGTTGAAGGCTGTATTGAAGGAAGTTGAAGATGCTGAAGGGAAGGTCATATTGTTTATTGATGAGATTCATCTTGTTCTTGGTGCTGGAAGAACTGAAGGGTCTATGGATGCTGCTAACCTCTTCAAGCCTATGCTGGCCAGAGGGCAGCTTCGTTGCATTGGGGCAACTACCCTTGAAGAGTACAGAAAGTACGTAGAGAAGGATGCGGCATTTGAGAGGCGGTTCCAACAGGTTTATGTGGCTGAACCGAGCGTGCCTGACACTATCAGCATCCTGCGAGGCCTGAAAGAGAGATATGAAGGCCACCATGGTGTTAGGATACAAGATCGAGCTCTTGTCGTCGCTGCCCAGCTTTCGAGTCGATATATCACTGGACGGCACCTTCCTGATAAGGCTATTGATTTAGTTGATGAAGCTTGTGCTAATGTGAGGGTCCAGCTTGATAGCCAGCCTGAAGAGATTGACAACTTGGAGAGGAAGCGAATGCAGCTTGAAGTTGAACTTCATGCTCTTGAGAAGGAGAAGGATAAAGCTAGTAAAGCTCGTCTTGTTGAAGTGAGGAGAGAGCTTGACGATTTGAGGGATAAGCTTCAGCCTTTGTTGATGAAATATCGCAAGGAGAAGGAAAGAATCGATGAGATTAGAAGACTGAAGCAGAGGAGGGAGGAGCTACAAATAGCTTTGCAAGAGGCTGAAAGAAGATACGATTTGGCAAGGGCTGCTGATTTGCGATATGGAGCCATCCAGGAAATAGAATCTGCATTAGCACGGATTGAAGGGAACACTGATGAGAATCTAATGTTAACCGAAACAGTCGGACCGGAACAAGTTGCGGAAGTTGTGAGCCGGTGGACTGGAATACCTGTCACGAGGCTTGGCCAGAATGACAAAGAGAGGCTGGTTGGGCTTGCTGAAAGACTGCACAAGAGAGTTGTGGGACAGAACCAAGCAGTGGATGCTGTGGCCGAGGCTGTGCTACGATCAAGAGCTGGATTGGGGAGGCCGCAGCAGCCAACTGGGTCGTTCCTGTTTCTGGGTCCAACCGGTGTTGGCAAAACTGAGCTTGCCAAGGCGCTTGCCGAGCAACTCTTCGATGATGAAAACCTCCTGGTGAGAATCGACATGTCTGAATATATGGAACAGCACTCAGTTTCACGCCTCATTGGTGCTCCTCCTGGGTATGTTGGGCATGAGGAAGGAGGGCAACTCACAGAGGCTGTAAGGCGGAGGCCTTACAGTGTTGTTCTATTTGATGAAGTGGAGAAAGCTCACGTCTCTGTGTTCAACACTCTTCTTCAAGTTTTAGACGATGGAAGGCTGACCGATGGCCAAGGCCGCACTGTGGATTTCAGAAACACAGTCATTATCATGACCTCTAACATTGGAGCTGAATATCTCCTTTCTGGGCTGATGGGGAAGTGCACAATGCAAGTTGCTCGTGATCGAGTTATGGAAGGGGTGCGGAAACACTTCAGGCCAGAGCTGCTTAATCGCTTGGATGAAATTGTTGTATTTGATCCTCTCTCGCACGACCAGCTGAGGAAAGTTGCCAGATTGCAAATGAAAGATGTTGCAGCTCGCCTGGCTGAGAGGGGCGTTGCCTTGGGTGTTACCGATGCCGCTCTGGATTATGTCTTGGCAGAGAGCTACGATCCAGTGTATGGCGCGAGACCCATAAGAAGATGGCTGGAGAAGAGGGTGGTGACGGAGCTGTCGAGAATGTTGATCAAAGAAGAAATCGACGAGAATTCAACTGTGTTCATTGATGCAGCAGCAGATGGGGATGGCTTGTCGTACAGAGTGGAGAAGAATGGTGGATTTGTTGATGCAGCAACTGGCAAAAAGTCTGATGTTTTGATTCAAATCAACAACGCCGTCCCGAGAAGCGAGGCTGCTCAGACTGTGAAGAAGATGAAGATTCAAGAAATTGATGAAGAAGATGAGATGGAAGAGTAA 2805 48.27 MPITSSFMSINRFRFYSILFLLADMNPDKFTHKTNEALAGAHELALNSGHAQLTPLHLAVALISDPSGILSQAIASSGGDNAQKEVDTVFKRALKKLPSQSPAPDVVPASTTLIKVIRRAQAAQKSRGDTHLAVDQLVLGLLEDSQIGDLLKEAGVTTAKVKSEVEKLRGKEGKKVESASGDSTFQALKTYGRDLVEQAGKLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEDAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTISILRGLKERYEGHHGVRIQDRALVVAAQLSSRYITGRHLPDKAIDLVDEACANVRVQLDSQPEEIDNLERKRMQLEVELHALEKEKDKASKARLVEVRRELDDLRDKLQPLLMKYRKEKERIDEIRRLKQRREELQIALQEAERRYDLARAADLRYGAIQEIESALARIEGNTDENLMLTETVGPEQVAEVVSRWTGIPVTRLGQNDKERLVGLAERLHKRVVGQNQAVDAVAEAVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKAHVSVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNIGAEYLLSGLMGKCTMQVARDRVMEGVRKHFRPELLNRLDEIVVFDPLSHDQLRKVARLQMKDVAARLAERGVALGVTDAALDYVLAESYDPVYGARPIRRWLEKRVVTELSRMLIKEEIDENSTVFIDAAADGDGLSYRVEKNGGFVDAATGKKSDVLIQINNAVPRSEAAQTVKKMKIQEIDEEDEMEE 934
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9468214 9472055 - Carg04754-RA Car13g00917 159834

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00917 934 Coils Coil 487 524 - -
Car13g00917 934 Pfam C-terminal, D2-small domain, of ClpB protein 791 870 IPR019489 -
Car13g00917 934 Pfam AAA domain (Cdc48 subfamily) 621 785 IPR003959 GO:0005524|GO:0016887
Car13g00917 934 Coils Coil 430 479 - -
Car13g00917 934 ProSiteProfiles Clp repeat (R) domain profile. 27 171 IPR004176 -
Car13g00917 934 Pfam ATPase family associated with various cellular activities (AAA) 228 341 IPR003959 GO:0005524|GO:0016887
Car13g00917 934 CDD AAA 595 790 - -
Car13g00917 934 Pfam AAA lid domain 368 467 IPR041546 -
Car13g00917 934 Pfam Clp amino terminal domain, pathogenicity island component 41 83 IPR004176 -
Car13g00917 934 Pfam Clp amino terminal domain, pathogenicity island component 120 170 IPR004176 -
Car13g00917 934 ProSitePatterns Chaperonins clpA/B signature 2. 655 673 IPR028299 -
Car13g00917 934 SMART AAA_5 223 368 IPR003593 -
Car13g00917 934 SMART AAA_5 621 765 IPR003593 -
Car13g00917 934 Coils Coil 277 297 - -
Car13g00917 934 CDD AAA 206 361 - -
Car13g00917 934 ProSitePatterns Chaperonins clpA/B signature 1. 319 331 IPR018368 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00917 K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB - csv:101221981 1660.2
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00711 Car-Chr1:4310410 Car13g00917 Car-Chr13:9468214 7.35E-45 dispersed
Car09g00954 Car-Chr9:5924221 Car13g00917 Car-Chr13:9468214 1.47E-139 dispersed
Car13g00109 Car-Chr13:788203 Car13g00917 Car-Chr13:9468214 7.60E-94 dispersed
Car01g00422 Car-Chr1:2426740 Car13g00917 Car-Chr13:9468214 0 transposed
Car01g00764 Car-Chr1:4622700 Car13g00917 Car-Chr13:9468214 0 transposed
Car09g00367 Car-Chr9:2010562 Car13g00917 Car-Chr13:9468214 0 transposed
Car01g00763 Car-Chr1:4621348 Car13g00917 Car-Chr13:9468214 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g643 Blo04g00788 . . . Bpe12g00459 . Bma06g00155 . Cmo13g01128 . . . . . . Cpe20g00068 . Bhi02g00694 Tan09g2052 Cmetu02g0330 . . . . Cla06g01547 Cam06g1708 Cec06g1768 Cco06g1769 Clacu06g1675 Cmu06g1621 Cre06g2434 Cone2ag0814 Cone16ag0200 . . Lsi02g00111 Csa01g00590 . Cme12g01952 . . Bda11g01719 Bda14g00871 . Bpe15g00585 Bma03g00847 Bma08g00280 Sed08g2114 . . Cma13g01080 . Car13g00917 . . . Bhi08g01100 Tan05g2372 Cmetu12g0960 Lac10g0140 Hepe07g2473 . . Cla04g01163 Cam04g1221 Cec01g1732 Cco01g1778 Clacu04g1248 Cmu04g1227 Cre01g1523 Lsi06g01422 Csa01g00282 Chy02g02452 Cme02g01838
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002248 4 2 1 2 2 2 4 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car13g00917 Car_Chr13 FPKM 6.653824 6.458273 5.645736 5.24069 7.025959 4.537813 8.583184 3.034828 3.048201 3.127963