Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00929 ATGGCGCTGTTTAGAAAATTATTCTACCGGAAGCCTCCAGATCGGCTTCTCGAGATTGCGGAGAGAGTGTACGTGTTTGATTGTTGCTTCTCTACGGACGTCTTGGAAGAGGATGAGTACAAAGTATATTTGGGTAGCATTATACCAAAGCTGCAAGACCACTTTCCTGATGCTTCTTTCATGGTGTTTAACTTTAGTGAACGAAAGAGGAAAACTAAAACTTGGGACATACTGTCTCAATATGGTATGACAGTGATGGAATATCCTCTGCAATATGAAGGGTGTCCTCTACTGCCATTGGAGATGATCCACCACTTCATTCGGTCGAGTGAAAGCTGGTTTTCATTGGAGGGACAAAAAAATGTATTGTTGATGAACTGTGAACGAGGAGGATGGCCAATCCTTGCTTTCATGCTTTCAGCTCTCTTATTGTACTGTAAACAATATGAGGGGGAGCAGAAGACCCTTGAAATGGTCTACAGGCAAGCTCCTACAGAACTTCTCCATGTCCTTTCTCCAGTAAACTCACAGCCTTCTCAAATGAGATACCTTCACTATATTTCTAGGAGAAATCTAGGTTCTTATTGGCCTATACCTGATACACCTCTAATTTTAGACTGTCTGATACTTCGAGAGCTTCCTATGCTTGATGGAGGAAAAGGGTGTCGGCCTATCATACGCATTTATGGTCCGGACCCTTTAACACCAGGAAACCGAAGTCCAAAACTTTTTTTTTCCAGTGCAAAGATGGAAAGAAATGGTCTCCAGTATCTACAGGCAGCAAGCAGAGTTGTAAAAATGGATGTTCGTTGTCATGTTCAAGGCGATGTTGTTCTTGAATGCATCCATTTAGATGGAGATCTAATACACGAGGAAGTAATGTTTAGAGTTATGTTTCACACAGCCTTTGTGCATTCAAACAGTTTGAAGCTCAATCGTGATGAGGTTGATGTTTTATGGGATGCCAAGGAGCAGTTTCATAAAAATTTTAGAGTAGAGGTACATTTTCTGAATGCTGAACATATTGTGCCAAACCTCACCTCAGCAGCAAAAAGTGATGACAAAATCGAAATCGAAAGCAACTCGACTGAGGAGTTTTTCGAAGTGGAAGAAATATTTAGCAATTTTGTTGACGTGCAGGAAGTAATGAGGGATTATGATGTTCAAATGGTACATGCGAATGAAACGGATGCTATAGACAATCAAGCAGCGTTGAAGGAAGATGCAGACCCGCCTACATTCCAACGCTGTAAATCATTTGGAGGGAGTCATGACTTTGACAAGAAGATGGATTGTAACGTTGAAGCAGTGAAGGACATCACTGTTGATGATGTGACTTTCAAAACAGATGAAAAAATGGACTCTGGTCTTCATGCCGTGAAGGACATTGTTGTGAATTATGGAGATAACAAGCCAAATCCTTTACTATTTTCTGGTAATGTACTGAGACGTACAGGGATCAAGGAACTGATAGACGATGCTTATGACATGTTGGAAGGGGTGGAGCATAAAGGGTATGGAGAAGATACTGCTAATCCACACGTTGAGTTAAAGCTTCCTTCAAAAAAGATGGAAGCCGATGCGTGGAGGCTTAAACAGAAGCCCAAACAGCCTGAAAAAGGGGACTTTCTTGTAAAACAGGCAAAACCAAATACTCTTCCACCAGCTCTTCAGGCTAACACATCTTTCTTGCATGTATCATCTCCTAAAGTTTCTTTGTCACCCTCTTCATATTTTCATATAAATGCAAGATCTCCTCCTCCACCTCCACCACCACCACCTCCTCCACCTTCCAATCACTTGGCACCTAAAAGTTCATCATTAGTGTGTGGAAATACACCTAAGCATAGTGCTCCACCACCTCCACCTCCACCTCCCTTACCTAGAGCTCTACCACAATTATCCCCCATACGGCCACCGGCTTCACATGGAGCTCTGCTTTCTCCACGCCTAACAAATGCTAGAGCTCTGCCACCACCCCCTCCCCCACCTCCTCCAATTCAGAGGACAGCTTCTGCACATTTAACCCAAGGGCGACAGGCTTTAACATCTCCAACAACATGTGTTGTATCATCTTCCCTGCCATCTCCAATTTGTGAAGCACCATCACCTCCTCAACCTACTACTGGTCCTCTTCCACTGGTTCCTTCTTCCAGATCTCCAGGAGGTATATCTCCACACCTAGGAGCTAAAGGAGTAAGTTCTTCAACTGATGTGAAAACACCATCTATAGTAATGAGGGGACGTGGGTTCTCGCGGAGCACAGGGGTGACTGCTAAAGTGCCTCAACGATCATCATTGAAACCTCTGCATTGGAGCAAGGTAACTCGGGTACCAAAAGGGAGCTTATGGGAAGAATTGCAAAGATGCGGAGATTCTGAAAGTGCACCAGAATTTGATGTATCTGAGCTGGAGACGCTTTTCTCTGTGACTGTCCCTAAACCTATTGCTGATTCAGGAGGTAAATCCGGAGGACGAAGAAAGTCAGTTGGATCAAAATTGGACAAAATTCACTTGATTGATCTTAGGAGGGCAAATAACACTGAAATCATGCTAACAAAAGTTCGGATGCCACTGTCTGACATGATGGCAGCAGTGCTCTCCATGGATGAGTCAGTATTAGATGTAGATCAAGTGGAAAATCTTATCAAATTTTGCCCCACCAAAGAAGAGATGGAGCTTCTCAAGGGATACTCTGGTGACATGGATAAACTTGGCAAGTGCGAACAGGTCGTTGCTTCAAAGTCACCATCACTTCTTGAATTTCATCTGGACCTTGGTAGCTTGGAAGCTGCGTCTAAGATACAATTGAAATCTTTGGCAGAAGAAATGCAAGCAATAACAAAAGGATTGGAAAAGGTGAAGCAGGAACTAGTTGCTTCTGAAAGTGATGGCCCCATCTCTCAAACTTTTCGTAAGATATTGAAAGGATTTGTTAATCTTGCCGAGAAGGAGGTCGAATCTGTGACCGTTCTTTACTCGGTGGTGGAGACCACTGCATGGTTGCAGGGTAGAAATGCTGATGCACTTGCTCTATATTTTGGCGAGGATCCTTCCCGTTCTCCATTTGAACAAGATTGTCCTGATGGATGGATGATCCACAAGTTGTTGAATGCAGGTTCTGTTCCTGTAGAACCTTTGAATCCATGTAACCAACATTGTCTACCTCTCCAGAGTGTATTTGAAGAGCCTGTCTTCCTTCCAGATCCACCCAGTAAACCGTCTTACAACTCTTGA 3237 43.44 MALFRKLFYRKPPDRLLEIAERVYVFDCCFSTDVLEEDEYKVYLGSIIPKLQDHFPDASFMVFNFSERKRKTKTWDILSQYGMTVMEYPLQYEGCPLLPLEMIHHFIRSSESWFSLEGQKNVLLMNCERGGWPILAFMLSALLLYCKQYEGEQKTLEMVYRQAPTELLHVLSPVNSQPSQMRYLHYISRRNLGSYWPIPDTPLILDCLILRELPMLDGGKGCRPIIRIYGPDPLTPGNRSPKLFFSSAKMERNGLQYLQAASRVVKMDVRCHVQGDVVLECIHLDGDLIHEEVMFRVMFHTAFVHSNSLKLNRDEVDVLWDAKEQFHKNFRVEVHFLNAEHIVPNLTSAAKSDDKIEIESNSTEEFFEVEEIFSNFVDVQEVMRDYDVQMVHANETDAIDNQAALKEDADPPTFQRCKSFGGSHDFDKKMDCNVEAVKDITVDDVTFKTDEKMDSGLHAVKDIVVNYGDNKPNPLLFSGNVLRRTGIKELIDDAYDMLEGVEHKGYGEDTANPHVELKLPSKKMEADAWRLKQKPKQPEKGDFLVKQAKPNTLPPALQANTSFLHVSSPKVSLSPSSYFHINARSPPPPPPPPPPPPSNHLAPKSSSLVCGNTPKHSAPPPPPPPPLPRALPQLSPIRPPASHGALLSPRLTNARALPPPPPPPPPIQRTASAHLTQGRQALTSPTTCVVSSSLPSPICEAPSPPQPTTGPLPLVPSSRSPGGISPHLGAKGVSSSTDVKTPSIVMRGRGFSRSTGVTAKVPQRSSLKPLHWSKVTRVPKGSLWEELQRCGDSESAPEFDVSELETLFSVTVPKPIADSGGKSGGRRKSVGSKLDKIHLIDLRRANNTEIMLTKVRMPLSDMMAAVLSMDESVLDVDQVENLIKFCPTKEEMELLKGYSGDMDKLGKCEQVVASKSPSLLEFHLDLGSLEAASKIQLKSLAEEMQAITKGLEKVKQELVASESDGPISQTFRKILKGFVNLAEKEVESVTVLYSVVETTAWLQGRNADALALYFGEDPSRSPFEQDCPDGWMIHKLLNAGSVPVEPLNPCNQHCLPLQSVFEEPVFLPDPPSKPSYNS 1078
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9535938 9545722 + Carg04742-RA Car13g00929 159846

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00929 1078 Pfam Formin Homology 2 Domain 762 910 IPR015425 -
Car13g00929 1078 Pfam Formin Homology 2 Domain 910 1024 IPR015425 -
Car13g00929 1078 MobiDBLite consensus disorder prediction 582 601 - -
Car13g00929 1078 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Car13g00929 1078 MobiDBLite consensus disorder prediction 577 738 - -
Car13g00929 1078 ProSiteProfiles Formin homology-2 (FH2) domain profile. 757 1078 IPR015425 -
Car13g00929 1078 MobiDBLite consensus disorder prediction 670 697 - -
Car13g00929 1078 Coils Coil 937 957 - -
Car13g00929 1078 MobiDBLite consensus disorder prediction 654 669 - -
Car13g00929 1078 MobiDBLite consensus disorder prediction 698 714 - -
Car13g00929 1078 MobiDBLite consensus disorder prediction 615 635 - -
Car13g00929 1078 Pfam C2 domain of PTEN tumour-suppressor protein 199 336 IPR014020 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00929 - - - csv:101221127 1184.09
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car11g00171 Car13g00929 CCT
Car10g00196 Car13g00929 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00196 Car-Chr10:937448 Car13g00929 Car-Chr13:9535938 5.12E-43 dispersed
Car13g00929 Car-Chr13:9535938 Car19g00151 Car-Chr19:1331078 5.68E-31 dispersed
Car01g00745 Car-Chr1:4513928 Car13g00929 Car-Chr13:9535938 1.73E-53 wgd
Car11g00171 Car-Chr11:942519 Car13g00929 Car-Chr13:9535938 1.85E-40 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g592 Blo04g00779 Blo16g00180 . . . Bpe13g00300 Bma06g00166 . . . Cma10g00209 Cma11g00123 Car10g00196 Car11g00171 . Cpe20g00055 Cpe04g01480 Bhi02g00293 Tan09g2089 . . Hepe09g0095 . . Cla06g01570 Cam06g1735 Cec06g1796 Cco06g1795 Clacu06g1702 Cmu06g1648 Cre06g2459 Cone2ag0827 Cone16ag0189 Cone13ag0054 . Lsi02g00091 Csa01g00571 Chy12g01523 Cme12g01971 . . Bda11g01706 Bda14g00861 . Bpe15g00594 Bma03g00847 . Sed08g0241 Cmo10g00227 Cmo11g00187 Cma13g01093 . Car13g00929 . . Cpe18g00780 Bhi08g01136 Tan05g2418 Cmetu02g1238 Lac10g0118 Hepe07g2490 . . Cla04g01181 Cam04g1237 Cec01g1748 Cco01g1794 Clacu04g1265 Cmu04g1244 Cre01g1538 Lsi06g01445 Csa01g00260 Chy02g02475 Cme02g01861
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001040 2 2 4 3 2 2 4 2 2 2 2 2 4 2 2 5 2 4 4 2 2 2 4 2 2 3 3 6 3 1 82
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car13g00929 Car_Chr13 FPKM 6.384956 6.09212 22.776079 22.535414 100.100746 105.653351 92.846329 17.824133 18.878548 15.916121