Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00931 ATGGAGTTCGGGACTGGAGGCGGCGGCGGCTCCGGTTGGGATAACGATTCCTCCTCCGACCCACAACGCCGGAAGAAATGCTACCATCGTCACACTGCCAATCAGATTCAGAGGCTCGAGGCAATGTTCAAAGAATGCCCACACCCAGATGAGAAACAGAGATTACAGTTAAGCAGAGAACTGGGATTGGCTCCTCGCCAAATCAAATTTTGGTTCCAGAATCGGAGGACCCAGATGAAGGCTCAACATGAAAGGGCAGACAATAGTGCACTTCGGGCAGAGAACGACAAGATTCGATGCGAGAACATAGCCATCAGAGAGGCCCTCAAGAATGTCATCTGCCCCTCCTGCGGTGGCCCTCCCCTTCAGGACCCTTACTTCGACGAACACAAACTACGAATCGAAAACGCCCATTTGAAGGAAGAGCTTGATAGAGTATCTAGCATTGCGGCCAAGTTCATCGGGAGGCCAATCTCTCAGCTTCCACCCATTCACCCACCTCATTTTTCGTCATTAGAGCTATCCATGGCTAGTTTTCCCTCCCAAGAAATTGGCTGCCCTTCTCTTGATCTTGATTTACTTCCTGCAAGTTCTACAAGTGTTCCCACTTTGCCATACCACCACCCAATTCACCTCTCCGCCGTGGATAAGTCCCTCATGACTGAAATTGCCACAAATGCCATGGCAGAGTTGCTCAGGCTTTCCCAAACTAATGAGCCATTCTGGATCAAATCAACAAATGATGGACGCGACGTTCTCGACCTCGAAACCTATGAACAGGCTTTTCCAAGACCCAACTCTCCCTTCAAGAATCCCCATTTTCGCACCGAAGCAACTAGAGATTCAGGTGTCGTGATCATGAATAGTGAAGCATTGGTTGATATGTTTATGGACTCGAACAAATGGACAGAATTATTTCCCACAATTGTGTCGATTGCAAGAACAATCGAAGTTATATCGTCTGGATTGTTGGGAACTCAGAATGGCTCGTTGCAACTGATGTACCAAGAACTGCAGCTACTCTCCCCATTGGTTTCGACTCGTCATTTTTACATCCTCAGATTTTGTCAACAAATCGAGCACGGCACGTGGGCCGTGGTTGATGTTTCCTACAACATCCCCAGAGAAAATCAAATAGTTTCTCATTCTCAATGTCACCGCCTTCCCTCTGGCTGCTTGATCCAGGACATGCCTAACGGTTACTCCAAGGTTACTTGGATTGAGCATGTGGAGGTGGAAGATAGAGGCTCCACTAATTGGCTTTGTAGAGATCTTATTCATAGTGGATTAGCCTTTGGTGCTGAACGTTGGGTTGCAACTCTTCAGCGGATGTCTGAAAGGCTTGCCTGTTTAATGATGACTGGTAGTTCCAGTCAGGATCTCGGCGGAGTAATTCCTTCATCAGAAGGGAAAAGAAGCATGATGAAACTAGCACAACGAATGGTGAACAATTTCTGTGCCAGTATCAGCTCATCTCATGGCCACCGTTGGACCACCCTTTCTGGGATGAATGAGGTTGGTGTTCGTGTCACGGTGCATAAAAGCATGGATCCTGGCCAGCCGAACGGCGTGGTTCTTAGTGCAGCTACAACCATATGGCTCTCAGTATCTCCTCAAACCATCTTTAACTTCTTTAAGAACGACAGAACCAGATCCCAGTGGGATGTTCTGTCGGATGGCAACCCGGTCCAGGAGGTTGCTCATATAACCAACGGATCCCATCCAGGGAATGCCATATCTGTTCTCAGAGCTTTCAATACAAGTCAGAATAACATGTTGATACTCCAAGAGAGTTGCATAGACTCATCAGGGTCACTTGTTGTGTACTGCCCTGTGGATCTACCAGCCATGAATGTTGTAATGAGTGGGGAGGACCCATCAAGTATTCCCTTACTACCTTCAGGATTCACAATTCTACCAGACGGTCGACGGGACCAAGGAGAGGGCACATCGAGCAGCCTCGACGTCCACAGCAGGTCAGGTGGCTCACTGTTGACCGTGGCGTTTCAGATACTCGTAAGCAGCTTGCCATCAGGAAAGCTGAACTTAGAGTCAGTAACAACGGTTAATAACCTTATCAGCACCACCCTCCACCAGATCAAAACAGCCTTAAATTGTCATAGTTCCTGA 2130 48.03 MEFGTGGGGGSGWDNDSSSDPQRRKKCYHRHTANQIQRLEAMFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNSALRAENDKIRCENIAIREALKNVICPSCGGPPLQDPYFDEHKLRIENAHLKEELDRVSSIAAKFIGRPISQLPPIHPPHFSSLELSMASFPSQEIGCPSLDLDLLPASSTSVPTLPYHHPIHLSAVDKSLMTEIATNAMAELLRLSQTNEPFWIKSTNDGRDVLDLETYEQAFPRPNSPFKNPHFRTEATRDSGVVIMNSEALVDMFMDSNKWTELFPTIVSIARTIEVISSGLLGTQNGSLQLMYQELQLLSPLVSTRHFYILRFCQQIEHGTWAVVDVSYNIPRENQIVSHSQCHRLPSGCLIQDMPNGYSKVTWIEHVEVEDRGSTNWLCRDLIHSGLAFGAERWVATLQRMSERLACLMMTGSSSQDLGGVIPSSEGKRSMMKLAQRMVNNFCASISSSHGHRWTTLSGMNEVGVRVTVHKSMDPGQPNGVVLSAATTIWLSVSPQTIFNFFKNDRTRSQWDVLSDGNPVQEVAHITNGSHPGNAISVLRAFNTSQNNMLILQESCIDSSGSLVVYCPVDLPAMNVVMSGEDPSSIPLLPSGFTILPDGRRDQGEGTSSSLDVHSRSGGSLLTVAFQILVSSLPSGKLNLESVTTVNNLISTTLHQIKTALNCHSS 709
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9550277 9553262 - Carg04740-RA Car13g00931 159848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00931 709 ProSiteProfiles START domain profile. 213 450 IPR002913 GO:0008289
Car13g00931 709 SUPERFAMILY Bet v1-like 469 701 - -
Car13g00931 709 SMART START_1 222 447 IPR002913 GO:0008289
Car13g00931 709 ProSitePatterns 'Homeobox' domain signature. 57 80 IPR017970 GO:0000981|GO:0006355
Car13g00931 709 MobiDBLite consensus disorder prediction 1 28 - -
Car13g00931 709 SUPERFAMILY Homeodomain-like 9 82 IPR009057 -
Car13g00931 709 SMART HOX_1 24 86 IPR001356 GO:0003677
Car13g00931 709 Gene3D - 220 448 IPR023393 -
Car13g00931 709 CDD START_ArGLABRA2_like 217 446 - -
Car13g00931 709 Pfam Homeodomain 28 80 IPR001356 GO:0003677
Car13g00931 709 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC8 4 707 - -
Car13g00931 709 SUPERFAMILY Bet v1-like 216 448 - -
Car13g00931 709 ProSiteProfiles 'Homeobox' domain profile. 22 82 IPR001356 GO:0003677
Car13g00931 709 Gene3D - 13 98 - -
Car13g00931 709 Pfam START domain 223 446 IPR002913 GO:0008289
Car13g00931 709 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 4 707 IPR042160 -
Car13g00931 709 CDD homeodomain 25 83 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car13g00931 Car-Chr13:9550277 Car17g00018 Car-Chr17:71992 0 dispersed
Car01g00693 Car-Chr1:4139304 Car13g00931 Car-Chr13:9550277 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4578 PF01852 START 8.40E-45 CL0209 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00931 K09338 - csv:101215660 1296.18