Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00944 ATGTTTTTGATTCAGGTTTGTAAGATTGTTGAAGGCCAGAGGTATTCCAAAAGGCTCAATGAAAGACAGATAACTGCTCTGCTCAAGGTTACATGCCAACGACCAAAAGATAGAGAGGAAGACATTATGCGGACGGTACGTCATAATGCATATCATGATGATCCATATGCAAGGGAGTTTGGAATTAAGATAAGTGCTAAGCTTGCTTCTGTTGAAGCTCGTATTCTTCCTGCACCATGGCTAAAATATCATGAGACCGGCAGAGAAAAGGATTGCTTGCCACAGGTTGGACAGTGGAATATGATGAATAAGAAAATGTTCAATGGTGGTACTGTAAACAACTGGATGTGCATAAATTTCTCTCGATATGTGCAAGACAGTGTTACTCGTGGGTTTTGTTATGAACTTGCTCAAATGTGTTACATTTCTGGCATGGCTTTCAATCCAGAACCAGTGATTCCTCCTATTTTTGCTCGTCCTGATCATGTGGAAAAGGCCCTTAAAACTCGGTACCATGATGCAATGAGCATTCTCCAACCCCAGGGCAAGGAGCTTGATCTGCTTATTGTTGTTTTGCCAGATAACAACGGATCTCTTTATGGTGATTTAAAACGAATCTGTGAAACGGATCTTGGCCTCGTTTCCCAGTGCTGTTTGACTAAACATGTCTTCAAAATGAGTAAACAGTATTTGGCCAATGTGGCCTTGAAAATAAACGTTAAGGTTGGGGGAAGAAATACAGTACTTGTTGATGCATTATCTAGGCGCATACCCTTGGTTAGTGACCGCCCTACCATTATATTTGGTGCCGATGTAACTCATCCTCACCCAGGAGAAGACTCAAGTCCATCCATTGCTGCTGTTGTGGCTTCTCAAGATTGGCCGGAAGTTACAAAATATGCTGGTTTGGTCAGTGCTCAAGCCCATAGGCAAGAGCTTATTCAAGATCTTTTCAAAACATGGCAGGATCCTGTAAGGGGGACTGTAACGGGTGGAATGGTCAAGGAACTCCTCATCTCCTTCCGTAGAGCCACTGGACAGAAACCTCAGCGCATTATATTTTACAGGGATGGGGTTAGCGAAGGACAGTTTTACCAAGTTTTATTGCATGAGCTGGATGCCATTCGAAAGGCATGCGCTTCTCTAGAACCAAACTACCAACCTCCAGTGACTTTCGTTGTTGTACAGAAGCGTCATCACACTAGGTTGTTTGCTAATAACCATTCTGATCGCCACGCTGTTGACAAGAGTGGGAACATATTGCCTGGTACGGTAGTTGACTCCAAAATTTGTCACCCTACGGAATTTGACTTTTACCTGTGCAGTCATGCTGGAATCCAGGGTACAAGTCGTCCAGCTCACTACCATGTTCTGTGGGATGAGAACAAGTTCACAGCTGACAGATTGCAGACTCTAACCAATAATCTTTGTTATACGTATGCAAGGTGTACTCGCTCTGTTTCTATTGTGCCCCCAGCCTACTACGCTCATCTTGCTGCATTCCGAGCTCGTTTCTATATGGAACCCGAGACTTCTGATAGCGGGTCAATTAGCAGTGATGCTGCTGCTGGACGTGGTGGCGGTGGTGGTGGTGGTGCTCGCAGCACACGGGCACCAGGGTTGAATGCTGCTGTTCGACCTTTGCCAGCTCTCAAAGAGAATGTTAAGAGGGTTATGTTCTATTGTTGA 1689 44.7 MFLIQVCKIVEGQRYSKRLNERQITALLKVTCQRPKDREEDIMRTVRHNAYHDDPYAREFGIKISAKLASVEARILPAPWLKYHETGREKDCLPQVGQWNMMNKKMFNGGTVNNWMCINFSRYVQDSVTRGFCYELAQMCYISGMAFNPEPVIPPIFARPDHVEKALKTRYHDAMSILQPQGKELDLLIVVLPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYLANVALKINVKVGGRNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVSAQAHRQELIQDLFKTWQDPVRGTVTGGMVKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLHELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHSDRHAVDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADRLQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSISSDAAAGRGGGGGGGARSTRAPGLNAAVRPLPALKENVKRVMFYC 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9613301 9620624 - Carg04727-RA Car13g00944 159861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00944 562 MobiDBLite consensus disorder prediction 512 539 - -
Car13g00944 562 Pfam Piwi domain 188 507 IPR003165 GO:0003676
Car13g00944 562 Pfam Argonaute linker 2 domain 37 83 IPR032472 -
Car13g00944 562 ProSiteProfiles Piwi domain profile. 187 508 IPR003165 GO:0003676
Car13g00944 562 Pfam Mid domain of argonaute 94 169 IPR032473 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g01179 Car-Chr6:8661963 Car13g00944 Car-Chr13:9613301 0 dispersed
Car13g00944 Car-Chr13:9613301 Car14g01580 Car-Chr14:12873168 0 dispersed
Car01g00706 Car-Chr1:4199722 Car13g00944 Car-Chr13:9613301 0 wgd
Car13g00944 Car-Chr13:9613301 Car18g01038 Car-Chr18:10704178 2.20E-151 wgd
Car13g00944 Car-Chr13:9613301 Car04g01720 Car-Chr4:9860567 5.66E-148 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00944 K11593 - csv:101212130 1085.48