Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00945 ATGGGCGCCACCCAACTCTTTGTTCTGTCTCTTATTTCCCTCACTCTCCTCTCCGCAGTTTCTTATTCAGAAGGCAATGGGTTGAAGATGAACGCCATTGACAGATGCTGGAGATCGAACCCGTACTGGAGGAGAAACAGGCAACAACTGGGCGTTTGCTCGGTGGGTTTCGTTGGAAAAATGACCAACAACGTCGGAAGAAATCTCATACGCTACCAAGTCACCGACCCTAGCGACGATCCTATAAACCCACGCCCAGGTACACTCCGATACGGCGCCACAATGATCAAGTCCAAAGTCTGGATCACCTTCCAAAAAGACATGCACATCCTGCTCCACAAGCCGCTTCTCATAAGCAGCTACACAGCCATCGACGGGCGAGGGGCCAGCGTCCACATCTCCGGTAATGCATGCCTGGTGGTCTCCAAGGCCACCAACATCATAATCCACGGCCTTATCATCCACCACTGCAAGGCTCAGGGCGCAGGACAAGTCATGGGCCCTAATTCCAAGTTGGTTTCGCTTGGACACGTGGACGGCGATGCCATTCGTTTAGTATCAGCATCCAAAGTCTGGATTGACCACAACACACTGTACCGCTGCGAGGATGGGCTGCTCGACGTCACCAGAGGCTCCACTGACATCACCATTTCCAACAATTGGTTCCGCGACCAAGACAAGGTTATTCTTCTCGGCCACGAGGACGGCTATGTCCGAGACAAGAACATGAGAGTCACTGTCGTCTATAACCATTTTGGACCCAACTGCAACCAAAGGATGCCGAGGATCCGACATGGGTATGCCCACGTGGCTAACAATTTGTACCAAGGATGGACGCAATACGCGATTGGAGGGAGCATGAATCCAAGCGTGAAGAGTGAAGCCAACCTGTTCATCGCATCAAAATCAAAACAGATTGTATGGAGCACCGGGAAAGTAGAGGCGGCAAAATGGAAGTTTCATTCCGTCAGAGACGTTTTTGAAAACGGAGCTTCCTTCGGACAGATTGGTGTGGGGCGAGGAGGCGTAAAGCCAAATTACAGCGCCCAGCAGCGGTTTCCAGTGGCTGATGCTAAGTGGGTGAGATCATTGACGAGCTCCTCCGGGGCTCTACGCTGCTCGTCAAAGTCAAGATGTTGA 1140 52.02 MGATQLFVLSLISLTLLSAVSYSEGNGLKMNAIDRCWRSNPYWRRNRQQLGVCSVGFVGKMTNNVGRNLIRYQVTDPSDDPINPRPGTLRYGATMIKSKVWITFQKDMHILLHKPLLISSYTAIDGRGASVHISGNACLVVSKATNIIIHGLIIHHCKAQGAGQVMGPNSKLVSLGHVDGDAIRLVSASKVWIDHNTLYRCEDGLLDVTRGSTDITISNNWFRDQDKVILLGHEDGYVRDKNMRVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYQGWTQYAIGGSMNPSVKSEANLFIASKSKQIVWSTGKVEAAKWKFHSVRDVFENGASFGQIGVGRGGVKPNYSAQQRFPVADAKWVRSLTSSSGALRCSSKSRC 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9623081 9624415 + Carg04726-RA Car13g00945 159862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00945 379 Pfam Pectate lyase 120 298 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car13g00945 Car-Chr13:9623081 Car13g00610 Car-Chr13:7838479 1.92E-106 dispersed
Car01g00707 Car-Chr1:4211809 Car13g00945 Car-Chr13:9623081 1.25E-137 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00945 K01728 - csv:101217103 659.833