Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00952 ATGTTGGAGGGTCCATCTTATCTCATCTCGAGGGACTTGCCTAGCTCTTGTGAACAAGAGAGCAAATGGGTTTATTACACTTTTCGTGTGATCGAAATGACAAATAAGAAGCATCTCTTAGAAGATAGGGTTGAACCTTTAGCAAAAAAATCATGCAAGTTGCCAGATGATGCTCACAATCGAGGGGAGGATGTACATGAGTTCTTAGTTGACGATCAGGATAAACAGCATTGTGGTGGAGACCAGTCGGATTCAGGTTCGCTGATCCACCAACTTGGTCGGGATATGTCAATAAATTGTCTCCTCCACTGCTCAAGATCAGAATACGGTTCGATTGCCTCTCTAAATCGAGGCTTCCGATCTCTTATTACGAGTGGTGAACTTTATAAACTGCGGAGGCAGATGGGCATCATTGAACATTGGATTTACTTCTCCTGCAGCCTTCTTGAATGGGATGCATACGATCCAAACTCTAACCGTTGGATGCGTCTGCCTATAATGGCATCAAACGAGTGTTTCATGTCTTCGGACAAGGAGTCATTGGCTGTTGGGACTGAACTTCTAGTTTTTGGGAAGGAAACAATTTCCCAAGTTATATATAGATATAGTATTTTAAATAACACATGGTCATCTGGGATGAAAATGAATGCACCCAGGTTTCTTTTTGGTTCTGCTAGTCTTGGTGAAATTGCAATTCTAGCAGGTGGTTGTGACCCACAAGGGAATCTCCTGAACTCAGCTGAGCTTTATAATTCTGAGAGAGGAACTTGGGTCACTCTTCCTAGAATGAACAAAGCACGGAAAATGTGCTCAGCAGTATTTCTTGAGGGAAAGTTCTATGTGATTGGTGGAACTGGGGCAGGTAATACCACTCTTACTTGTGGTGAAGAATATGATTTGAAGACTCGGACGTGGCGTGAGATACCTAACATGTATCCTGGACGAAATGCTGGAGATGGGGCTGCTGTGCCGGTTGCTGCTGTTGAGGCACCTCCTTTGGTTGCAGTTATAAACGATAAGTTGTATGCTGCCGACTATGCACATAGGGAGGTTAAAAGATATGACAAGGCAAGACAATTGTGGGTGGCAGTAGGCCGATTGCCCGAGCGGGTGGTCTCAACAAATGGTTGGGGGTTGGCATTCAGGGCTTGTGGAGATCGACTCATCGTCATTGGTGGACCGAGGGCTTTAGGTGGACGTATGATTGAGATATATTCTTGGGCCCCAGATCAAGGGCAGCTGCATTGGGGTGTGCTTGCCAGCAGGCAGTTAGGTAATTTTGTGTATAACTGTGCAGTCATGGGATGCTGA 1311 45.23 MLEGPSYLISRDLPSSCEQESKWVYYTFRVIEMTNKKHLLEDRVEPLAKKSCKLPDDAHNRGEDVHEFLVDDQDKQHCGGDQSDSGSLIHQLGRDMSINCLLHCSRSEYGSIASLNRGFRSLITSGELYKLRRQMGIIEHWIYFSCSLLEWDAYDPNSNRWMRLPIMASNECFMSSDKESLAVGTELLVFGKETISQVIYRYSILNNTWSSGMKMNAPRFLFGSASLGEIAILAGGCDPQGNLLNSAELYNSERGTWVTLPRMNKARKMCSAVFLEGKFYVIGGTGAGNTTLTCGEEYDLKTRTWREIPNMYPGRNAGDGAAVPVAAVEAPPLVAVINDKLYAADYAHREVKRYDKARQLWVAVGRLPERVVSTNGWGLAFRACGDRLIVIGGPRALGGRMIEIYSWAPDQGQLHWGVLASRQLGNFVYNCAVMGC 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9648068 9649378 + Carg04719-RA Car13g00952 159869

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00952 436 Pfam Kelch motif 266 311 IPR006652 GO:0005515
Car13g00952 436 Pfam Kelch motif 218 264 IPR006652 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00952 - - - csv:101215424 814.298
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01687 Car-Chr4:9699873 Car13g00952 Car-Chr13:9648068 5.31E-155 dispersed
Car13g00952 Car-Chr13:9648068 Car17g00558 Car-Chr17:5211505 1.74E-121 dispersed
Car01g00714 Car-Chr1:4387678 Car13g00952 Car-Chr13:9648068 0 wgd
Car01g00714 Car-Chr1:4387678 Car13g00952 Car-Chr13:9648068 0 wgd
Car13g00952 Car-Chr13:9648068 Car18g01072 Car-Chr18:10881129 5.56E-164 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g528 Blo04g00765 . . . . . . . Cmo13g01169 . . . . . . Cpe20g00034 . . . . . . . . . . . . . . . . Cone16ag0157 . Cone19ag0082 Lsi02g00055 Csa01g00528 Chy12g01559 Cme12g02013 . . . Bda14g00843 . Bpe15g00608 Bma03g00821 . . . . Cma13g01118 . Car13g00952 . . . . . . . . . . Cla04g01214 Cam04g1280 Cec01g1789 Cco01g1835 Clacu04g1309 Cmu04g1284 Cre01g1575 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008261 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 4 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car13g00952 Car_Chr13 FPKM 12.030736 12.505754 5.805145 7.025176 5.285719 5.110332 6.015954 15.608568 16.093935 18.61974