Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00961 ATGGCGACGTCAGGACAGTGGCTGGAGAAGGCGTTGGACGATCTCTGCAAGAAGATGGAAACTGGTTGGGGTCTTGATAAGGATATGATTTCGGGATTGGTCTCGTATTGTGAGCTCGCCCAGCCCCAAGACGCTAAGGAGTACCTTGATAACATCATAGGTCAGGAAGTTGGGAAAAGTGTGATAGATGAGTATTTACGCCTGCGAGGCTACTCTGACCCCTGCAGCAAAACATTGGATGTTCCAACGTCAAATTTACACGCCTATCTCAAGCCACCCTCCCATGAAGGTTCTTTTGGCGGATCCAAGAAACCTGTTAAAACACCAAAAACCATTTCTATCTCCAGCAAAGAGATAGAACCAAAGAAGGTCGCAAGCTCTAGTAAGGTGGAAAACCAGGTTTCATCAGACACTCGCAACTCATTGTCTGGTAAAGGGAATCAGGGTACTTCCAAAAAGAAGAAGGCTGCCAAAGCTGTTTCTCTGGCTGAAGCTGCCAAAGGATCATTTGTGTTCCAGCAAGGAAAACCATGTTCATGCCAAGCTCGTCGTCATAGGCTAGTAAGCAATTGTTTATCATGTGGCAAGATTGTATGTGAGCAAGAGGGAGAAGGGCCATGCAGTTTTTGTGGTTCCCTTGTTCTGAGAGAAGGGAGCACGTATGCTGGTATGGATGAAGGTTTTACCCCACTTTCAGATGCTGAAGCAGCAGCTGAAGCTTATGCCAAAAGGTTAGTTGAATATGACAGAAACTCTGCTGCAAGGACATCTGTAATTGATGATCAAAGTGATTATTACCAGATTGAGGGCAACAACTGGTTGTCTAACGAGGAGAAGGAACTTTTGAGAAAGAAACAAGAGGAAATTGAAGAGGCTGAGCGAGCTAAACGAAACAAAGTGGTTGTAACCTTTGACTTGGTTGGCCGCAAGGTTCTTTTGAATGAAGATGATACTTCTGAACTTGAATCGCGCAACAGTATCTTGCGGCCACCAGATGAAAGAGAAGTGAACAGGATTAAACCAAACCCATCTCTTCAAATACATCCCGTCTTCTTAGATCCAGGCCCCAGAGAAAAATCCACCAAACCCAGAAACTCAAACAGAACCGTAAGCAATGGCATTTGCCTGGAAATTACTGGAAGAGTGCAGCATGATAGCAACGAATTAAAGAACTTTATGGTGGAGAATGAGTTGGAAACGTCATTCAATAGGAAAGCTTGGCAAGGACCTTCGGTAAATCACAGGCCGCAATTGCAGGACAATTATGAATGTTCTTTAGATGCTCGTTGA 1290 44.65 MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLDNIIGQEVGKSVIDEYLRLRGYSDPCSKTLDVPTSNLHAYLKPPSHEGSFGGSKKPVKTPKTISISSKEIEPKKVASSSKVENQVSSDTRNSLSGKGNQGTSKKKKAAKAVSLAEAAKGSFVFQQGKPCSCQARRHRLVSNCLSCGKIVCEQEGEGPCSFCGSLVLREGSTYAGMDEGFTPLSDAEAAAEAYAKRLVEYDRNSAARTSVIDDQSDYYQIEGNNWLSNEEKELLRKKQEEIEEAERAKRNKVVVTFDLVGRKVLLNEDDTSELESRNSILRPPDEREVNRIKPNPSLQIHPVFLDPGPREKSTKPRNSNRTVSNGICLEITGRVQHDSNELKNFMVENELETSFNRKAWQGPSVNHRPQLQDNYECSLDAR 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9673317 9676516 - Carg04710-RA Car13g00961 159878

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00961 429 Pfam Putative zinc finger motif, C2HC5-type 176 216 IPR009349 GO:0005634|GO:0006355|GO:0008270
Car13g00961 429 Coils Coil 231 251 - -
Car13g00961 429 Coils Coil 275 302 - -
Car13g00961 429 MobiDBLite consensus disorder prediction 92 155 - -
Car13g00961 429 MobiDBLite consensus disorder prediction 332 371 - -
Car13g00961 429 MobiDBLite consensus disorder prediction 126 150 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00961 K23398 TRIP4; activating signal cointegrator 1 - csv:101216786 698.738
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g541 . . . . . Bpe13g00288 . . Cmo13g01180 . . . . . . Cpe20g00023 . . . . . . . . . . . . . . . . Cone16ag0162 . . Lsi02g00067 . . . . . . . . . . . . . . Cma13g01126 . Car13g00961 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014705 0 1 0 0 1 1 1 0 0 0 0 0 1 0 2 1 0 1 1 0 0 1 1 1 1 0 1 2 1 1 19
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car13g00961 Car_Chr13 FPKM 29.261265 30.737106 26.880688 27.869925 31.358742 27.679562 31.406092 27.777803 28.434303 26.407951