Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00971 ATGGCTTGTTCGTTGAAGACTGGTCTCTCTGTTTCAGGGCTGAAGGATCGTTTGTGTTACTCTAATTCATCTGGGGTTTCTGGGTTTTCTACTTCTGTTTGTGCTTCCAGTTTAAAAGTGTCAAAGCAGCCGGGGTTTCCTGTTTTGAGCGTCGATTTCTTGGGGAATCCTGTAGTGATTTCGGATCGAAATGGTATTAGAAACTCAAACGCTAAAGCCCCAAATAGACTGACCGTTTATGCACAGGCATCGATTTGTGTAAGCCGAGCTCGGAGATGGTGGGAAAAAACCCTGAAACCTAACATGGTGGAGATCCATTCTGCACAAGCCCTTGTGGATGCATTGCTTGATGCTGGCGATAGATTAGCCATTATTGACTTCTATTCCCCTGGCTGTGGAGGTTGCAAAGCCCTTCATCCTAAGATCTGTCAACTGGCTGAATTGAACCCTGATGCAATTTTTCTGAAAGTTAACTTTGAGGAGCTCAAAACCATGTGCCAAGCTCTCCATATTCGTGTTCTTCCTTTCTTTAGATTCTATAGAGGCGGAGAAGGTCGTGTCTGTAGCTTCAGCTGTACAAATGCAACTATTAAGAAATTCAAGGATGCATTGGCTAAACACGGAAGCGACCGGAGTAGCATCCTTCCAGCCAAAGGATTAGACGAGTCGGAGCTGGAACGGTTATATCTGAAGGAAAGAACATTGAAGGGTGTAGCGATGAAAGAAATGGATTGTTACGGTTCTTGGGGAACATCAGGCAATAAAATGGAAGTCATGGAAGAGAACAACATGATTCTTAAGGTGTGA 807 44.24 MACSLKTGLSVSGLKDRLCYSNSSGVSGFSTSVCASSLKVSKQPGFPVLSVDFLGNPVVISDRNGIRNSNAKAPNRLTVYAQASICVSRARRWWEKTLKPNMVEIHSAQALVDALLDAGDRLAIIDFYSPGCGGCKALHPKICQLAELNPDAIFLKVNFEELKTMCQALHIRVLPFFRFYRGGEGRVCSFSCTNATIKKFKDALAKHGSDRSSILPAKGLDESELERLYLKERTLKGVAMKEMDCYGSWGTSGNKMEVMEENNMILKV 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9721342 9723102 + Carg04700-RA Car13g00971 159888

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00971 268 Pfam Thioredoxin 115 190 IPR013766 -
Car13g00971 268 ProSiteProfiles Thioredoxin domain profile. 67 234 IPR013766 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00971 - - - cmax:111495076 508.834
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00857 Car-Chr6:6698379 Car13g00971 Car-Chr13:9721342 3.66E-47 dispersed
Car13g00971 Car-Chr13:9721342 Car14g01005 Car-Chr14:8191480 1.79E-67 dispersed
Car06g01473 Car-Chr6:10429580 Car13g00971 Car-Chr13:9721342 9.04E-70 transposed
Car01g00734 Car-Chr1:4480272 Car13g00971 Car-Chr13:9721342 7.39E-147 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g568 Blo04g00776 Blo16g00183 . . . Bpe13g00297 . . Cmo13g01195 . . . . . . Cpe20g00014 . . . . . . . . . . . . . . . Cone2ag0839 Cone16ag0176 . . Lsi02g00083 Csa01g00562 Chy12g01531 Cme12g01980 . . . . . . . . Sed08g2081 . . Cma13g01140 . Car13g00971 . . . Bhi08g01145 Tan05g2429 . . Hepe07g2500 . . Cla04g01189 Cam04g1246 Cec01g1757 Cco01g1802 Clacu04g1274 Cmu04g1253 Cre01g1546 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007323 0 2 2 0 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 2 1 1 1 1 1 4 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car13g00971 Car_Chr13 FPKM 0.0 0.0 0.351862 0.572352 0.883696 0.888022 0.777397 0.0 0.313605 0.0