Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car13g00976 | ATGGATTGCAAGGAGCTCAATTTGAACGAAGATTGTGGTGCCTGTGGTAGCGGGGTAAAAAATGGAGGAGATGCGTTTATAGACAGGAGCAAAGTGAGGATTTTGCTGTGCGATAATGATTCAAAAAGTTCAGAAGAGGTTTTCAAGCTTCTTTTGAAATGTTCCTACCAGGTCATTTCCGTGAGCTCAGCTAGACAGGTCATCGATGCTTTGAATGCGGAGGGACCTGAAATTGATATTATACTCTCAGAAGTTGACCTGCCAATGGCCAAAGGTATGAAAATGTTGAAGTATATCACCCGGGATAAAGAGCTCCGGCGCATTCCTGTTATCATGATGTCAACACAAGATGAAGTCCCTATTGTCGTTAAGTGCTTGAGGCTTGGAGCAGCCGACTATCTTGTAAAGCCTTTACGGACAAATGAGCTATTAAACTTGTGGACGCATATGTGGAGAAGAAGACGCATGCTTGGACTGGCAGAAAAAAACATTTTGAACTATGAATTTGATTTGGTGGCATCAGACCCAAGTGATGCCAACACAAATAGTACTACTTTGTTCTCGGATGACACTGATGACAAGTCACGTAGGAGCACAAATCCAGAGATGGGAGTTGCAACACTCCAGGAAGATGAGTCTGGTATTGCTGCCGCACTGGTAGAACCTCCTGCTGTTCATACAGTGGAACATCAGCCAGATGTACCTGGAATTAGCGAGCGCCGAATAGGGCAACCATCTTCATGCCCCAGAAAGAGTGAACTAAAGATTGGGGAATCATCCGCATTCTTTACGTATGTCAAATCAAGAAGTGTGAAGAATAAGGCAGTAGACGTTGAGGACAATGGCAAACGACTTTGGCTGGATGAAAATCATCAAGAAAAAACTGGTCAGCCTGTAGTTCGTCTTCCCCCCATACCAGAAAGTGTGGAGGCCTTGGAAAGCCATTCACAAGGAGACGAAATCCCAAGTAGTACTAGTTTTCCTGATTCTTTTTCTGTGGAGAGATCTTGTACGCCACCTGCTGGCTCAGGAGTTCACAAGGAAAGAAGCTTCAATGAAGAAAATTGCTCTCAAGTGCATGTGCAACCGCCAAATGGATCTCAACTTGATATTTCAGGCCTACCTGTGCAAACACAAACTGCTTATCCCTTCTATACGCCAGAAGGTATGATGTCGGCGCAACTGTACCAAAAGAACTTGCACGATATGCATAATCATGCGGCAATGATGTCACAGTACGGTCATTTTCATCATTGCCCTCCCAATGTAAGTGGGGTGGCATCTTATCCTTATTACCCCATGAATATATGTTTACAACCTGGTCAAATGCCCGCTACTAATAATACTCATTCATGGCCATCTTTTGGAAATTCATCTTCCAATGAAGCGAAATCGAACAAATTTGATAGAAGAGAGGCAGCACTGATTAAATTTAGGCAGAAAAGGAAAGAGCGGTGTTTTGATAAGAAGATTAGGTATGTTAATAGGAAGCGACTTGCAGAAAGGAGGCCCCGTGTGCGGGGTCAGTTTGTGAGAAAGGTAAATGGCGTCAATGTAGATCTTAATGGACAACCTGCATCTGCTGATGATGTCGAGGATGAAGACGAGGAGGAGCAACTATCAAGGGATTCCTCTCATGAGGATGATGGTTTAGGATATTAG | 1662 | 43.86 | MDCKELNLNEDCGACGSGVKNGGDAFIDRSKVRILLCDNDSKSSEEVFKLLLKCSYQVISVSSARQVIDALNAEGPEIDIILSEVDLPMAKGMKMLKYITRDKELRRIPVIMMSTQDEVPIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNILNYEFDLVASDPSDANTNSTTLFSDDTDDKSRRSTNPEMGVATLQEDESGIAAALVEPPAVHTVEHQPDVPGISERRIGQPSSCPRKSELKIGESSAFFTYVKSRSVKNKAVDVEDNGKRLWLDENHQEKTGQPVVRLPPIPESVEALESHSQGDEIPSSTSFPDSFSVERSCTPPAGSGVHKERSFNEENCSQVHVQPPNGSQLDISGLPVQTQTAYPFYTPEGMMSAQLYQKNLHDMHNHAAMMSQYGHFHHCPPNVSGVASYPYYPMNICLQPGQMPATNNTHSWPSFGNSSSNEAKSNKFDRREAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKVNGVNVDLNGQPASADDVEDEDEEEQLSRDSSHEDDGLGY | 553 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 9736380 | 9740692 | + | Carg04695-RA | Car13g00976 | 159893 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car13g00976 | 553 | MobiDBLite | consensus disorder prediction | 355 | 372 | - | - | |
Car13g00976 | 553 | ProSiteProfiles | CCT domain profile. | 471 | 513 | IPR010402 | GO:0005515 | |
Car13g00976 | 553 | ProSiteProfiles | Response regulatory domain profile. | 33 | 151 | IPR001789 | GO:0000160 | |
Car13g00976 | 553 | Gene3D | - | 32 | 237 | - | - | |
Car13g00976 | 553 | Pfam | CCT motif | 471 | 513 | IPR010402 | GO:0005515 | |
Car13g00976 | 553 | MobiDBLite | consensus disorder prediction | 317 | 337 | - | - | |
Car13g00976 | 553 | SUPERFAMILY | CheY-like | 30 | 158 | IPR011006 | - | |
Car13g00976 | 553 | MobiDBLite | consensus disorder prediction | 527 | 542 | - | - | |
Car13g00976 | 553 | MobiDBLite | consensus disorder prediction | 310 | 372 | - | - | |
Car13g00976 | 553 | MobiDBLite | consensus disorder prediction | 228 | 252 | - | - | |
Car13g00976 | 553 | MobiDBLite | consensus disorder prediction | 517 | 553 | - | - | |
Car13g00976 | 553 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR1 | 4 | 530 | - | - | |
Car13g00976 | 553 | MobiDBLite | consensus disorder prediction | 180 | 200 | - | - | |
Car13g00976 | 553 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 4 | 530 | IPR045279 | GO:0009736 | |
Car13g00976 | 553 | SMART | REC_2 | 32 | 147 | IPR001789 | GO:0000160 | |
Car13g00976 | 553 | Pfam | Response regulator receiver domain | 34 | 145 | IPR001789 | GO:0000160 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car12g00620 | Car-Chr12:4209855 | Car13g00976 | Car-Chr13:9736380 | 9.85E-14 | dispersed | |
Car13g00976 | Car-Chr13:9736380 | Car14g01419 | Car-Chr14:11919856 | 9.28E-21 | dispersed | |
Car01g00740 | Car-Chr1:4502637 | Car13g00976 | Car-Chr13:9736380 | 0 | wgd | |
Car11g00166 | Car-Chr11:909897 | Car13g00976 | Car-Chr13:9736380 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
4587 | PF00072 | Response_reg | 8.10E-17 | CL0304 | Car | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car13g00976 | K12127 | - | csv:101220107 | 989.178 |