Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00976 ATGGATTGCAAGGAGCTCAATTTGAACGAAGATTGTGGTGCCTGTGGTAGCGGGGTAAAAAATGGAGGAGATGCGTTTATAGACAGGAGCAAAGTGAGGATTTTGCTGTGCGATAATGATTCAAAAAGTTCAGAAGAGGTTTTCAAGCTTCTTTTGAAATGTTCCTACCAGGTCATTTCCGTGAGCTCAGCTAGACAGGTCATCGATGCTTTGAATGCGGAGGGACCTGAAATTGATATTATACTCTCAGAAGTTGACCTGCCAATGGCCAAAGGTATGAAAATGTTGAAGTATATCACCCGGGATAAAGAGCTCCGGCGCATTCCTGTTATCATGATGTCAACACAAGATGAAGTCCCTATTGTCGTTAAGTGCTTGAGGCTTGGAGCAGCCGACTATCTTGTAAAGCCTTTACGGACAAATGAGCTATTAAACTTGTGGACGCATATGTGGAGAAGAAGACGCATGCTTGGACTGGCAGAAAAAAACATTTTGAACTATGAATTTGATTTGGTGGCATCAGACCCAAGTGATGCCAACACAAATAGTACTACTTTGTTCTCGGATGACACTGATGACAAGTCACGTAGGAGCACAAATCCAGAGATGGGAGTTGCAACACTCCAGGAAGATGAGTCTGGTATTGCTGCCGCACTGGTAGAACCTCCTGCTGTTCATACAGTGGAACATCAGCCAGATGTACCTGGAATTAGCGAGCGCCGAATAGGGCAACCATCTTCATGCCCCAGAAAGAGTGAACTAAAGATTGGGGAATCATCCGCATTCTTTACGTATGTCAAATCAAGAAGTGTGAAGAATAAGGCAGTAGACGTTGAGGACAATGGCAAACGACTTTGGCTGGATGAAAATCATCAAGAAAAAACTGGTCAGCCTGTAGTTCGTCTTCCCCCCATACCAGAAAGTGTGGAGGCCTTGGAAAGCCATTCACAAGGAGACGAAATCCCAAGTAGTACTAGTTTTCCTGATTCTTTTTCTGTGGAGAGATCTTGTACGCCACCTGCTGGCTCAGGAGTTCACAAGGAAAGAAGCTTCAATGAAGAAAATTGCTCTCAAGTGCATGTGCAACCGCCAAATGGATCTCAACTTGATATTTCAGGCCTACCTGTGCAAACACAAACTGCTTATCCCTTCTATACGCCAGAAGGTATGATGTCGGCGCAACTGTACCAAAAGAACTTGCACGATATGCATAATCATGCGGCAATGATGTCACAGTACGGTCATTTTCATCATTGCCCTCCCAATGTAAGTGGGGTGGCATCTTATCCTTATTACCCCATGAATATATGTTTACAACCTGGTCAAATGCCCGCTACTAATAATACTCATTCATGGCCATCTTTTGGAAATTCATCTTCCAATGAAGCGAAATCGAACAAATTTGATAGAAGAGAGGCAGCACTGATTAAATTTAGGCAGAAAAGGAAAGAGCGGTGTTTTGATAAGAAGATTAGGTATGTTAATAGGAAGCGACTTGCAGAAAGGAGGCCCCGTGTGCGGGGTCAGTTTGTGAGAAAGGTAAATGGCGTCAATGTAGATCTTAATGGACAACCTGCATCTGCTGATGATGTCGAGGATGAAGACGAGGAGGAGCAACTATCAAGGGATTCCTCTCATGAGGATGATGGTTTAGGATATTAG 1662 43.86 MDCKELNLNEDCGACGSGVKNGGDAFIDRSKVRILLCDNDSKSSEEVFKLLLKCSYQVISVSSARQVIDALNAEGPEIDIILSEVDLPMAKGMKMLKYITRDKELRRIPVIMMSTQDEVPIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNILNYEFDLVASDPSDANTNSTTLFSDDTDDKSRRSTNPEMGVATLQEDESGIAAALVEPPAVHTVEHQPDVPGISERRIGQPSSCPRKSELKIGESSAFFTYVKSRSVKNKAVDVEDNGKRLWLDENHQEKTGQPVVRLPPIPESVEALESHSQGDEIPSSTSFPDSFSVERSCTPPAGSGVHKERSFNEENCSQVHVQPPNGSQLDISGLPVQTQTAYPFYTPEGMMSAQLYQKNLHDMHNHAAMMSQYGHFHHCPPNVSGVASYPYYPMNICLQPGQMPATNNTHSWPSFGNSSSNEAKSNKFDRREAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKVNGVNVDLNGQPASADDVEDEDEEEQLSRDSSHEDDGLGY 553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9736380 9740692 + Carg04695-RA Car13g00976 159893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00976 553 MobiDBLite consensus disorder prediction 355 372 - -
Car13g00976 553 ProSiteProfiles CCT domain profile. 471 513 IPR010402 GO:0005515
Car13g00976 553 ProSiteProfiles Response regulatory domain profile. 33 151 IPR001789 GO:0000160
Car13g00976 553 Gene3D - 32 237 - -
Car13g00976 553 Pfam CCT motif 471 513 IPR010402 GO:0005515
Car13g00976 553 MobiDBLite consensus disorder prediction 317 337 - -
Car13g00976 553 SUPERFAMILY CheY-like 30 158 IPR011006 -
Car13g00976 553 MobiDBLite consensus disorder prediction 527 542 - -
Car13g00976 553 MobiDBLite consensus disorder prediction 310 372 - -
Car13g00976 553 MobiDBLite consensus disorder prediction 228 252 - -
Car13g00976 553 MobiDBLite consensus disorder prediction 517 553 - -
Car13g00976 553 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR1 4 530 - -
Car13g00976 553 MobiDBLite consensus disorder prediction 180 200 - -
Car13g00976 553 PANTHER TWO-COMPONENT RESPONSE REGULATOR 4 530 IPR045279 GO:0009736
Car13g00976 553 SMART REC_2 32 147 IPR001789 GO:0000160
Car13g00976 553 Pfam Response regulator receiver domain 34 145 IPR001789 GO:0000160
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00620 Car-Chr12:4209855 Car13g00976 Car-Chr13:9736380 9.85E-14 dispersed
Car13g00976 Car-Chr13:9736380 Car14g01419 Car-Chr14:11919856 9.28E-21 dispersed
Car01g00740 Car-Chr1:4502637 Car13g00976 Car-Chr13:9736380 0 wgd
Car11g00166 Car-Chr11:909897 Car13g00976 Car-Chr13:9736380 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4587 PF00072 Response_reg 8.10E-17 CL0304 Car TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00976 K12127 - csv:101220107 989.178