Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00981 ATGGCCTTTCAAGGAAAGAAGCTCATCAACAAGCCCGACGATGTGGTGACGGAATTCATTGAGGGTTTGGTGGAAACATATCCTGGATTACAGTACTTGGATGGTTTTCCTAAGGTGAAAGTCGTTCTACGAGCGGATGTTTCAGGCGGTGGAAGTGGACATGAGCCTGCACATGCTGGATTTGTTGGGGAAGGAATGCTGACGGCAGCTATTTGTGGGGATGTTTTTGCCTCTCCACCAGTTGATTCGATTTTGGCTGGAATTCGAGCTGTAACTGGACCTATGGGATGTCTTCTCATCGTGAAGAATTATACTGGTGACCGTTTAAATTTTGGTTTGGCTGCGGAGCAAGCAAAATCAGAGGGATATAAAGTAGAGACTGTTATTGTTGGGGATGATTGTGCTTTGCCTCCACCTCGAGGTATAGCTGGCCGTAGAGGTTTGGCTGGGACTGTACTTGTTCACAAGGTTGCTGGAGCTGCTGCTGCTGCAGGGCTCTCTCTTTTAGATGTTGCCACAGAAGCAAAACATGCGGCTGACATGATTGGAACGATGGGAGTCGCATTGTCAGTTTGCACACTGCCTGGCCAGGTCACATCAGATCGCTTGGGCCCAGGGAAAATGGAACTTGGTCTTGGAATTCATGGTGAACCCGGTGCTGCTGTGGCTGACCTTCAGCCAGTTGACGTGATAGTATCTCATGTTCTCAAACAAATATTATCACCGGAAACTAACTATGTTCCAATAACACGAGGTAATAGGGTGGTGCTCATGGTTAACGGACTGGGTGCTACCCCAATGATGGAATTAATGATAGCAACTGGGAAAGCAGTTCCTAAGTTGCAGCTAGAGCATGGGTTGGCTGTTGACAGAATGTACACTGGTTCATTTATGACTTCTCTTGATATGGCAGGTTTTTCAATTACCATCATGAAATCAGATCAAGCTGTTTTGCAACGGTTGGATGCTGCAACCAAGGCTCCTTGTTGGCCCATTGGTGCTGATGGCAATCACCCACCTGCCAAAATACCTGTTCCAATACCACCACCAGCTCTTGCTACAAAGAACGGGGAGACATTTGGTGGACCCCTTCAACTAAATCAACAAGGCCTCATCCTAGAGGCTGCAATTGAGGCAGCTGCCAAAGCAGTGATCAATCTCAAGGACGCATTAAATGAATGGGATAGCAAAGTGGGTGATGGTGATTGTGGGTCAACGATGTTCAGGGGTGCAACAGCTGTTCTTGAGGACATAAAATGGCAATTGCTACCCATCCTCAGCTATCCACTGAACGATGCTGCTGAGACAGTGAATGAAATTGGATCATCCATTAGAAGGGTTATGGGAGGAACTAGTGGGATCATATATACAATATTTTGCAAGGCAGCATATACAAAATTGAAATCAAGCAGCCTAGATGACATCACCCCTAAAAAATGGGCTGAAGCATTAGAAGCTTCCATTGCTGCAATTAGCAAGTATGGTGGGGCTACTGCTGGTTATCGAACATTACTTGATGCCCTCATTCCAGCGTCTGAAGTTCTTAGGAAGAGGTTAGATGCTGGTGAAAATCCAACCACCGCTTTTATTCAATCATCTGAAGCAGCATCGGCTGGGGCTGAAGCAACAAAGAACATGCAGGCTCTGGCTGGCCGTTCGTCCTATGTATTTGGAGAACTCCTCGCAGCAGTTCCAGATCCAGGTGCAATGGGCGCTGCAGCATGGTACAAAGCTGCGGCTATGGCTGTCAGGGACAAGAGCCTTCACACTTGA 1773 47.21 MAFQGKKLINKPDDVVTEFIEGLVETYPGLQYLDGFPKVKVVLRADVSGGGSGHEPAHAGFVGEGMLTAAICGDVFASPPVDSILAGIRAVTGPMGCLLIVKNYTGDRLNFGLAAEQAKSEGYKVETVIVGDDCALPPPRGIAGRRGLAGTVLVHKVAGAAAAAGLSLLDVATEAKHAADMIGTMGVALSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVADLQPVDVIVSHVLKQILSPETNYVPITRGNRVVLMVNGLGATPMMELMIATGKAVPKLQLEHGLAVDRMYTGSFMTSLDMAGFSITIMKSDQAVLQRLDAATKAPCWPIGADGNHPPAKIPVPIPPPALATKNGETFGGPLQLNQQGLILEAAIEAAAKAVINLKDALNEWDSKVGDGDCGSTMFRGATAVLEDIKWQLLPILSYPLNDAAETVNEIGSSIRRVMGGTSGIIYTIFCKAAYTKLKSSSLDDITPKKWAEALEASIAAISKYGGATAGYRTLLDALIPASEVLRKRLDAGENPTTAFIQSSEAASAGAEATKNMQALAGRSSYVFGELLAAVPDPGAMGAAAWYKAAAMAVRDKSLHT 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9767710 9797111 - Carg04690-RA Car13g00981 159898

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00981 590 Coils Coil 373 393 - -
Car13g00981 590 Pfam Dak1 domain 47 328 IPR004006 GO:0004371|GO:0006071
Car13g00981 590 Pfam DAK2 domain 397 579 IPR004007 GO:0004371|GO:0006071
Car13g00981 590 ProSiteProfiles DhaK domain profile. 11 330 IPR004006 GO:0004371|GO:0006071
Car13g00981 590 ProSiteProfiles DhaL domain profile. 371 581 IPR004007 GO:0004371|GO:0006071
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00981 - - - csv:101209672 998.423
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g944 . . . . . . . Bma12g01273 Cmo13g01209 . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0309 Lsi02g00014 Csa01g00489 Chy12g01592 Cme12g02050 . Blo15g00052 . . Bpe07g01078 . . . . . . . . Car13g00981 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003104 1 8 1 1 2 1 1 3 2 3 1 1 1 1 1 1 2 1 1 3 1 1 1 2 3 1 1 2 3 1 52
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car13g00981 Car_Chr13 FPKM 17.552641 18.556763 4.469358 4.909601 25.615601 20.756992 24.223967 0.518701 0.201333 0.282394