Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00983 ATGGGTCTCTTTCTTTCCAGAAATATTGTAAATTTTCTTATCTCTTCCCTCTTCTCATCCAAGAAAATCCCTACGAATCTCGTCCCTTCTCAGATTGAAAACATGGTCTCCATGGTGTCAGCCCGTACCGGAAGACACAGGCAGCGCTTCAATAAAGAGTATCGCCTGGTTGTAGGATGCATTCCTTACAGATACAAAGACGCCCAGAAATCGTTTTCGGTTGACAATATAGAAGTTCTTGTGATTAGTTCGCAGAAAGGGCATGCAATGTTGTTCCCGAAGGGTGGGTGGGAAAACGACGAGTCAATGGAAACCGCAGCTTCAAGAGAGACATTCGAGGAAGCTGGAGTGACTGGCAACATCGAAAGCAGATTAGGCAAATGGTATTACAAGAGCAAGAGGCATGCGAAGATGCATGAAGCCTACATGTTCGCTTTGCGTGTAACGAAACAACTGGAAAATTGGCCGGAGAAAGATATCCGAAAGCGAGAATGGATGAGTGTGGAGAAAGCCAGAGAAGTTTGCCCTCACATGTGGATGAAAGAGGCTTTAGATTTATTACTCATACGACAATCAGAAGTTGAGCAGAACTTGGATGACGAAACGCCTTGTTCATAA 618 44.5 MGLFLSRNIVNFLISSLFSSKKIPTNLVPSQIENMVSMVSARTGRHRQRFNKEYRLVVGCIPYRYKDAQKSFSVDNIEVLVISSQKGHAMLFPKGGWENDESMETAASRETFEEAGVTGNIESRLGKWYYKSKRHAKMHEAYMFALRVTKQLENWPEKDIRKREWMSVEKAREVCPHMWMKEALDLLLIRQSEVEQNLDDETPCS 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9800364 9801572 - Carg04688-RA Car13g00983 159900

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00983 205 CDD Nudix_Hydrolase_9 56 181 - -
Car13g00983 205 PANTHER DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE 15 196 - -
Car13g00983 205 SUPERFAMILY Nudix 40 188 IPR015797 -
Car13g00983 205 PANTHER NUDIX HYDROLASE 4-LIKE 15 196 - -
Car13g00983 205 ProSitePatterns Nudix box signature. 95 116 IPR020084 GO:0016787
Car13g00983 205 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 38 190 - -
Car13g00983 205 ProSiteProfiles Nudix hydrolase domain profile. 53 188 IPR000086 -
Car13g00983 205 Pfam NUDIX domain 79 171 IPR000086 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00983 K07766 E3.6.1.52; diphosphoinositol-polyphosphate diphosphatase [EC:3.6.1.52] - mnt:21402256 252.677
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car13g00983 Car18g00197 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g01258 Car-Chr11:10447168 Car13g00983 Car-Chr13:9800364 2.43E-41 dispersed
Car13g00983 Car-Chr13:9800364 Car15g00683 Car-Chr15:3808416 2.89E-67 dispersed
Car01g00675 Car-Chr1:4015648 Car13g00983 Car-Chr13:9800364 9.59E-118 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g876 . . Bda06g00628 Bda15g00529 Bpe12g00680 . Bma06g00237 Bma12g01066 Cmo13g00798 Cmo18g00179 . . . . . Cpe20g00340 . . . . . . . . . . . . . . . . . Cone13ag0191 Cone19ag0186 Lsi02g00455 Csa01g00912 Chy12g01212 Cme12g02054 . Blo15g00240 Bda11g01631 . Bpe07g00869 . . Bma08g00073 Sed08g2470 . . Cma13g00769 Cma18g00203 Car13g00983 Car18g00197 Cpe09g00993 . Bhi08g01684 Tan05g2884 Cmetu12g0322 Lac10g0529 Hepe07g2171 . . Cla03g00313 Cam03g0332 Cec03g0323 Cco03g0336 Clacu03g0333 Cmu03g0939 Cre03g0633 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014882 1 0 2 1 2 0 2 0 0 0 0 0 2 0 0 1 0 2 2 0 0 1 0 0 0 0 0 1 0 0 17
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car13g00983 Car_Chr13 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0