Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car14g00128 ATGAATTTCTCCTCCATTCCTCCTTATCTTGATCCTTCCAACTGGCACCAGCAACTCACCCATCAACTGGGAACCACCACCACCGGAGTTAGCTCTCAGCTCCTTCCTCCACCCCCTCCTCCGCCTCCTCCCCCACCTCCCCCTCCCCCCCATGGCGTCGGTGCTCCCACTTCCATCCGCCCCGGTTCGATGGCCGAGCGAGCTCGAATGGCTAATATTCCCATGCCTGAGGCAGCATTGAAATGCCCAAGATGTGATTCAACCAACACTAAGTTCTGCTACTTCAACAATTACAGCCTCACTCAACCTCGCCACTTTTGTAAGACATGTCGAAGGTACTGGACTAGAGGTGGAACGCTGCGAAGCGTTCCGGTCGGGGGCGGGTGCCGGAGAAACAAAAGAAGCAAAGGGAGAAGTTCCAAGTCGCCGCCGGTCAGTTCCGACCGACAACAAACCTGTGGTTCAGGGAATTCCTCATCGAGTGCAATAGCTTCCAACAATAGTGGAGGTCTTTCCCCACAGATTCCACCTCTCCGCTTCATGGCTCCTCTCCACCAACAACTCAGCGACTTCGACATCGGTGGCTTCAACTACGGTGGTGGCCTCTCAGCTCCGGCCACCGTTACCGGCGACCTGAATTTCCAATTGGGCAACACTAATTTAGGTGGAGGAACAAGCATTGGATCTCTCTTGGGATTTGACCAACAATGGCGGCTCCAACAACAAGCTCCTCAATTTCCCTTCTTTTCCGGGTTAGACCCTTTCGACGGTGGTAGCGGTAGCGGCGGTGACGGACCCAGCTGGGAAATGAGGCAAAAATTACCATCAAGCTCAAGGAATTTAACCCAAATGGGGAATTCAGTAAAAATGGAAGAAACCCCAGATCAAGGTAATAACATTGGAAGACAATTAGTTGGCAATGAACAATATTGGAGCAGCGGATCAATGGGATGGTCGGATCCTTCTGGTTTCAGTTCTTCATCTTCAACAAGAAACCCATTATAG 1005 51.84 MNFSSIPPYLDPSNWHQQLTHQLGTTTTGVSSQLLPPPPPPPPPPPPPPPHGVGAPTSIRPGSMAERARMANIPMPEAALKCPRCDSTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGTLRSVPVGGGCRRNKRSKGRSSKSPPVSSDRQQTCGSGNSSSSAIASNNSGGLSPQIPPLRFMAPLHQQLSDFDIGGFNYGGGLSAPATVTGDLNFQLGNTNLGGGTSIGSLLGFDQQWRLQQQAPQFPFFSGLDPFDGGSGSGGDGPSWEMRQKLPSSSRNLTQMGNSVKMEETPDQGNNIGRQLVGNEQYWSSGSMGWSDPSGFSSSSSTRNPL 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 617199 618504 + Carg12556-RA Car14g00128 160030

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car14g00128 334 ProSiteProfiles Zinc finger Dof-type profile. 80 134 IPR003851 GO:0003677|GO:0006355
Car14g00128 334 MobiDBLite consensus disorder prediction 271 334 - -
Car14g00128 334 MobiDBLite consensus disorder prediction 139 169 - -
Car14g00128 334 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 4 330 IPR045174 GO:0003700|GO:0006355
Car14g00128 334 ProSitePatterns Zinc finger Dof-type signature. 82 118 IPR003851 GO:0003677|GO:0006355
Car14g00128 334 Pfam Dof domain, zinc finger 79 134 IPR003851 GO:0003677|GO:0006355
Car14g00128 334 PANTHER DOF ZINC FINGER PROTEIN DOF3.6 4 330 - -
Car14g00128 334 SUPERFAMILY Formin homology 2 domain (FH2 domain) 39 47 - -
Car14g00128 334 MobiDBLite consensus disorder prediction 33 55 - -
Car14g00128 334 MobiDBLite consensus disorder prediction 24 60 - -
Car14g00128 334 MobiDBLite consensus disorder prediction 121 169 - -
Car14g00128 334 MobiDBLite consensus disorder prediction 248 334 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car14g00128 - - - cpep:111791192 508.834
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car03g00379 Car14g00128 CCT
Car03g00379 Car14g00128 ECH
Car06g00263 Car14g00128 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02541 Car-Chr4:20112631 Car14g00128 Car-Chr14:617199 3.33E-55 dispersed
Car13g00103 Car-Chr13:742863 Car14g00128 Car-Chr14:617199 1.11E-52 dispersed
Car13g00167 Car-Chr13:1686357 Car14g00128 Car-Chr14:617199 5.57E-39 dispersed
Car01g00540 Car-Chr1:3203824 Car14g00128 Car-Chr14:617199 2.02E-58 wgd
Car14g00128 Car-Chr14:617199 Car15g00373 Car-Chr15:1950676 6.66E-49 wgd
Car14g00128 Car-Chr14:617199 Car02g00587 Car-Chr2:4460372 1.68E-44 wgd
Car14g00128 Car-Chr14:617199 Car20g00359 Car-Chr20:2020738 1.65E-41 wgd
Car14g00128 Car-Chr14:617199 Car03g00379 Car-Chr3:4584565 6.66E-53 wgd
Car14g00128 Car-Chr14:617199 Car04g00201 Car-Chr4:1109912 2.00E-46 wgd
Car14g00128 Car-Chr14:617199 Car06g00263 Car-Chr6:1493595 2.22E-142 wgd
Car14g00128 Car-Chr14:617199 Car07g00965 Car-Chr7:5466298 1.97E-32 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g716 Blo01g01119 . . . Bpe04g01330 Bpe03g01040 . . Cmo06g00304 Cmo14g00147 Cma03g00431 . Car03g00379 . . Cpe10g00881 Cpe08g01160 . . . . . . . Cla04g00818 Cam04g0898 Cec04g0967 Cco04g1020 Clacu04g0873 Cmu04g0866 Cre01g0476 Cone3ag0333 Cone10ag0305 Cone13ag1337 Cone19ag1320 Lsi01g01417 Csa04g01478 . Cme04g02612 Blo07g01180 . . Bda05g00969 . Bpe02g00845 Bma01g01875 . Sed02g0688 Cmo03g00443 . Cma06g00304 Cma14g00157 Car06g00263 Car14g00128 Cpe03g00124 . Bhi11g02243 Tan08g1993 Cmetu08g1957 . . . . Cla10g02000 Cam10g2068 Cec10g2109 Cco10g2091 Clacu10g2073 Cmu10g2821 Cre10g2214 Lsi03g02101 Csa03g03190 Chy04g02140 Cme08g02396
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car13g00488 CCT,CST 16 169 C2C2-Dof Transcription Factor Family AT1G29160 57.2 5.4e-45 177.9
Car18g00388 CCT,CST 11 155 C2C2-Dof Transcription Factor Family AT1G29160 52.9 2.8e-41 165.6
Car03g01185 CCT,CST 11 161 C2C2-Dof Transcription Factor Family AT1G29160 52.4 4.0e-40 161.8
Car07g00157 CCT,CST 11 162 C2C2-Dof Transcription Factor Family AT1G29160 53.8 4.0e-40 161.8
Car15g01176 CST 1 96 C2C2-Dof Transcription Factor Family AT1G64620 72.5 2.3e-39 160.2
Car13g00488 CCT,CST 16 169 C2C2-Dof Transcription Factor Family AT2G34140 56.2 5.3e-45 177.9
Car18g00388 CCT,CST 11 155 C2C2-Dof Transcription Factor Family AT2G34140 52.4 1.2e-41 166.8
Car03g01185 CCT,CST 11 161 C2C2-Dof Transcription Factor Family AT2G34140 51.8 4.8e-38 154.8
Car07g00157 CCT,CST 11 162 C2C2-Dof Transcription Factor Family AT2G34140 50.9 2.4e-37 152.5
Car04g02541 . 1 142 C2C2-Dof Transcription Factor Family AT2G37590 67.4 9.9e-40 161.4
Car14g00128 CCT,CST,ECH 1 132 C2C2-Dof Transcription Factor Family AT2G37590 64.5 1.9e-38 157.1
Car06g00263 CCT,CST,ECH 1 128 C2C2-Dof Transcription Factor Family AT2G37590 64.1 2.7e-37 153.3
Car01g00540 CCT,CST,ECH 55 129 C2C2-Dof Transcription Factor Family AT2G37590 89.3 4.6e-37 152.5
Car15g00373 . 1 125 C2C2-Dof Transcription Factor Family AT2G37590 58.9 7.8e-37 151.8
Car13g00103 CCT,CST,ECH 30 104 C2C2-Dof Transcription Factor Family AT2G37590 89.3 1.7e-36 150.6
Car15g01176 CST 1 94 C2C2-Dof Transcription Factor Family AT4G24060 74.0 6.0e-40 162.2
Car06g00758 . 87 222 C2C2-Dof Transcription Factor Family AT5G39660 56.9 3.4e-38 156.8
Car01g00540 CCT,CST,ECH 1 129 C2C2-Dof Transcription Factor Family AT5G02460 57.6 9.1e-40 161.8
Car13g00103 CCT,CST,ECH 23 104 C2C2-Dof Transcription Factor Family AT5G02460 86.6 3.8e-38 156.4
Car15g00373 . 1 125 C2C2-Dof Transcription Factor Family AT5G02460 57.8 1.5e-37 154.5
Car03g00379 CCT,ECH 43 116 C2C2-Dof Transcription Factor Family AT5G02460 86.5 2.1e-36 150.6
Car03g00379 CCT,ECH 19 138 C2C2-Dof Transcription Factor Family AT3G55370 62.8 5.1e-37 152.5
Car11g00205 CCT,CST 26 315 C2C2-Dof Transcription Factor Family AT5G60850 51.3 1.4e-48 190.7
Car10g00264 CCT,CST 26 320 C2C2-Dof Transcription Factor Family AT5G60850 54.0 9.2e-48 188.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004817 1 1 1 3 3 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4596 PF02701 zf-Dof 6.10E-32 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car14g00128 Car_Chr14 FPKM 0.564137 0.681328 4.715237 5.2349 26.393604 19.345751 27.227459 0.417498 0.617267 0.491803