Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car14g00231 | ATGCGGGCTTTCTCTTCCTTGATCTTGGCCTTAGCTGCCGTTGTTCTGCCGGCGGCGGTGGTTTACTGCGGCTTCCCCGTCCCACTTCTCTCTCTGCAGAGGGCCTTCCCTTCTTCTCGCCCTGTCCAACTCGAAACCCTTAGAGCTCGGGACCGACTAAGGCATGCCAGAATGTTGCAAGGTGTCGTCGACTTCTCAGTCGAAGGTTCTTCCGATCCATTGCTCATCGGGCTTTACTTTACGAAAGTTAAATTGGGCACTCCCCCGAGGGAATTTTCGGTGCAGATCGACACTGGAAGTGATATTTTGTGGGTGAACTGCAATTCCTGCAATGGATGCCCCACATCAAGTGGACTTGGAGTAAGGGTCTTTCTTTTCACCTCCTCTCTTGCTAGTGTCAAATTGCCCTATGGCCTCCATGCTAGAGTCCTTATTTTAGTTTACCCTGTGCAGATTCAACTAAATTTCTTTGATGCTTCCATCTCATCAAGTTCTTCACTCATCTCCTGTTCTGACCCAATATGCAATTCTGCATTCCAAACAACTGCAACACAGTGTCTATCTCAGAGTAAACAATGCAGTTACACCTTTCAGTATGGTGATGGAAGTGGAACATCAGGTTATTATGTATCTGAGTCCATGTACTTCGACATGGTTATGGGACCTTCTATGATTGTTAACTCTTCAGCTACTGTTGTTTTTGGCGAGGATGCTGGACCCTCAAAGAGGGTGGATTATGAGATCCCACGTCAGCTAGAGAGGGGAACAAAGCATTCCTTTTGTAGCACCTATCAGTCAGGAGACTTGACTAAATCTGACCATGCAATTGATGGCATTTTTGGATTTGGCCCCGGGGATTTGTCTGTCATATCACAGTTGTCAGCTCGAGGGGTAACCCCTAAAGTATTTTCCCATTGTTTAAAAGGAGAAGGAAATGGTGGCGGTATATTGGTTCTTGGTGAGGTTTTGGAGCCAGGCATTGTGTATAGCCCACTTGTGCCCTCTCAGCCTCACTATAACTTATACCTGCAAAGCATTGCTGTCAATGGTCAGACACTGTCAATTGATCCATCTGTGTTTGCAACATCAAACAATCGAGGAACTATTGTAGACTCTGGGACAACATTGGCTTACCTTGTTGAAGAAGCTTATACTCCATTTGTCAACGCTATAACTGCTGCTGTTTCCCAATCTGTGACTCCTACTATTTCAAAGGGCAACCAGTGTTATCTAGTATCCACCAGTGTAGGCGAGATATTTCCTCTGGTTAGCTTAAACTTCGCGGGCAGTGCATCTATGGTGTTAAAACCTGAACAATATCTTATGCATCTTGGCTTTTATGATGGTGCTGCATTATGGTGTATTGGTTTTCAGAAAGTTCAGGAAGGAGTAACGATTTTAGGAGATATAGTTATGAAAGACAAGATATTTGTATATGATTTGGCTCGCCAGCGAATTGGGTGGGCAAATTATGATTGTTCCCAAGCTGTAAACGTATCAGTCACATCTGAGAAGAACAGGTTCGTGAATGCAGGACAGTTGAGCGTGAGCGGTTCGACTCGAGATAAACTCCTCCAATCATCAACTATGGGAGCATTAGCAGTGTTAGTGAGTCTCACCAGAGATTCCTGTAACTGTCATCGGCATTATTCCAAAGAAGGAAGTGATTACCAGACTTCAGGAGTTCGCGATTTCCCTGTTGTAATGGCGGCGGTTCCTCAGACGGCGGTTCATGCCTCTCCGGCTTCGCTCTATGTTGGCGACCTTCATCCTGATGTCACTGATGGTCAGCTCTTTGATGCTTTCTCTGGATTCAAGAGCCTTGCCTCTGTTCGTATCTGTAGAGATTCCGCTACTGGACGCTCTCTCTCTTATGGCTACGTCAATTTCATGTCTCCGCAAGACGCTACCAATGCGATAGAGGCAATGAATCACAGAATGCTCAATGGAAGAGCGATTCGAGTCATGTGGTCACGCCGCGATCCTGGTGCAAGAAAAAGTGGAATTGGAAACGTGTTTGTTAAGAACTTGAGCGATTCAATCAATGGTTTAGGACTTCAAGAGCTATTTAAGAAATTTGGAAATGTTCTGTCCAGCAAAGTAGTCACATCCGATGATGGGAAGAGCAAAGGATACGGCTTTGTTCAATTTGAGTCTGAGGATTCCGCAAAAGCTGCCATAGAGTCACTGAATGGTTTTACCATTGGGGATAAGCAGATATATGTCGGAAAGTTTATCTGGAAGAGTGAACGAGTCCTTGCCAATCCTGATGTTAAATACACCAATTTGTATGTGAAAAATCTTGACGCAGAGATCGGGGAAGAGCATTTGCAGGAAAAGTTTTCTGAGTTTGGAAAAATCTCCAGCATGATTATTTCAAGGGATGAGAATGGAATGTCAAGAGGTTTTGGCTTTATAAACTTTGTAAACTCTGATGATGCGAAACGGGCATTAGAAGCACTTAATGGATCGCAACTGGGTTCTAAGCATATCTACATTGCACGGGCGCAGAAGAAGACAGAGCGTGAGGAAGTATTACGTCGACGTTACGAAGAGAAATGTAAAGAGCAGGGCTCAAATGTGTATGTGAAGAACATTGAAGATGGTGTTACTGATGAAGAACTAAGAGAGCTTTTCAGTCCGTGTGGCACCATCACTTCATCAAAACTTATGCGAGATGACAAGGGAATAAACAAAGGGTTTGGATTTGTCTGCTTCTCCAATCCCGACGAAGCTAAAAGAGCCGTGAACAGTCTGCAAGGATATATGTTTCACGGGAAGCCACTCTACTTGGCTATAGCACAAAGAAAAGTGGATAGACAAATGCAACTGAGGAATCAGTTTGCACAACGGATGGCAGCGATGCTAGGACAGTCAACACTTTTTCAGGGTGGATGCACACCTTATTATTACCCAGCACCAGGTGTTGTTCCACAAGTACCATCTCGTTCAGGTTTGACGTTTCAGCCTTTAGGAATGAACCCTGCGTGGAGAGCTAATGCCTTCACATCTCCTGCAAGACCTGCTTTTCAACCTACACCTGTACCTATTATTCCGAATGCTTCGAGGCAACCCAGGCAAAACAGAGGCAAAATAAATGGACCAATGCTTTCTCATCAAAATGGTGTCCAATCTGTCTATTATATGCACAATTCACAAGATGCCCATCAACCAGGAGTTATAGATAAATCATCCGGCAATCAGCAGATTTTCAATTTTCTTGTCCAACGTAATGTAATTGGAGGTGTTTTGGACTTGAGCACTAATTTGGAAAAAGTTGGATGGACCGGACAGGTTAAGTATGTCCCAAATGCACGCCCATGTGAAAGAAACCAAACTTCTGGAGTCTCAGCTGCTGCTTTTAATTCTGCTGGAGATGTCTCTCAGGGATCCCAAATACTGAGCAGCATCCTTTCTTCCTCTCCCCCAGACCAACAAAAACAGATCCTTGGGGAGCATCTCTACCCCCTTGTCCAAAAATGCAAGCCGGAGCTAGCTGCGAAGATTACTGGGATGCTTCTGGAGATGGACAACTCGGAATTACTGCTTCTGTTAGAGTCACCTGAATCTCTAGTTGCCAAGGTTGAAGAAGCAGTGCAGGTGCTTAAGATCTCAAAGAGTAAGCTGTCCAACCAAGACTCTGATTTCCATACCGGCTGA | 3660 | 44.75 | MRAFSSLILALAAVVLPAAVVYCGFPVPLLSLQRAFPSSRPVQLETLRARDRLRHARMLQGVVDFSVEGSSDPLLIGLYFTKVKLGTPPREFSVQIDTGSDILWVNCNSCNGCPTSSGLGVRVFLFTSSLASVKLPYGLHARVLILVYPVQIQLNFFDASISSSSSLISCSDPICNSAFQTTATQCLSQSKQCSYTFQYGDGSGTSGYYVSESMYFDMVMGPSMIVNSSATVVFGEDAGPSKRVDYEIPRQLERGTKHSFCSTYQSGDLTKSDHAIDGIFGFGPGDLSVISQLSARGVTPKVFSHCLKGEGNGGGILVLGEVLEPGIVYSPLVPSQPHYNLYLQSIAVNGQTLSIDPSVFATSNNRGTIVDSGTTLAYLVEEAYTPFVNAITAAVSQSVTPTISKGNQCYLVSTSVGEIFPLVSLNFAGSASMVLKPEQYLMHLGFYDGAALWCIGFQKVQEGVTILGDIVMKDKIFVYDLARQRIGWANYDCSQAVNVSVTSEKNRFVNAGQLSVSGSTRDKLLQSSTMGALAVLVSLTRDSCNCHRHYSKEGSDYQTSGVRDFPVVMAAVPQTAVHASPASLYVGDLHPDVTDGQLFDAFSGFKSLASVRICRDSATGRSLSYGYVNFMSPQDATNAIEAMNHRMLNGRAIRVMWSRRDPGARKSGIGNVFVKNLSDSINGLGLQELFKKFGNVLSSKVVTSDDGKSKGYGFVQFESEDSAKAAIESLNGFTIGDKQIYVGKFIWKSERVLANPDVKYTNLYVKNLDAEIGEEHLQEKFSEFGKISSMIISRDENGMSRGFGFINFVNSDDAKRALEALNGSQLGSKHIYIARAQKKTEREEVLRRRYEEKCKEQGSNVYVKNIEDGVTDEELRELFSPCGTITSSKLMRDDKGINKGFGFVCFSNPDEAKRAVNSLQGYMFHGKPLYLAIAQRKVDRQMQLRNQFAQRMAAMLGQSTLFQGGCTPYYYPAPGVVPQVPSRSGLTFQPLGMNPAWRANAFTSPARPAFQPTPVPIIPNASRQPRQNRGKINGPMLSHQNGVQSVYYMHNSQDAHQPGVIDKSSGNQQIFNFLVQRNVIGGVLDLSTNLEKVGWTGQVKYVPNARPCERNQTSGVSAAAFNSAGDVSQGSQILSSILSSSPPDQQKQILGEHLYPLVQKCKPELAAKITGMLLEMDNSELLLLLESPESLVAKVEEAVQVLKISKSKLSNQDSDFHTG | 1219 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 14 | 1082388 | 1091769 | + | Carg03724-RA | Car14g00231 | 160133 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car14g00231 | 1219 | Pfam | Xylanase inhibitor C-terminal | 338 | 489 | IPR032799 | - | |
| Car14g00231 | 1219 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 582 | 660 | IPR000504 | GO:0003723 | |
| Car14g00231 | 1219 | Pfam | Poly-adenylate binding protein, unique domain | 1138 | 1202 | IPR002004 | GO:0003723 | |
| Car14g00231 | 1219 | Pfam | Xylanase inhibitor N-terminal | 79 | 320 | IPR032861 | - | |
| Car14g00231 | 1219 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 670 | 742 | IPR000504 | GO:0003723 | |
| Car14g00231 | 1219 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 859 | 936 | IPR000504 | GO:0003723 | |
| Car14g00231 | 1219 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 861 | 929 | IPR000504 | GO:0003723 | |
| Car14g00231 | 1219 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 672 | 740 | IPR000504 | GO:0003723 | |
| Car14g00231 | 1219 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 584 | 654 | IPR000504 | GO:0003723 | |
| Car14g00231 | 1219 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 763 | 831 | IPR000504 | GO:0003723 | |
| Car14g00231 | 1219 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 761 | 838 | IPR000504 | GO:0003723 | |
| Car14g00231 | 1219 | ProSiteProfiles | Poly(A)-binding protein C-terminal (PABC) domain profile. | 1130 | 1207 | IPR002004 | GO:0003723 | |
| Car14g00231 | 1219 | ProSiteProfiles | Peptidase family A1 domain profile. | 79 | 489 | IPR033121 | - | |
| Car14g00231 | 1219 | Coils | Coil | 833 | 853 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car04g00656 | Car-Chr4:3810666 | Car14g00231 | Car-Chr14:1082388 | 8.25E-07 | dispersed | |
| Car10g00774 | Car-Chr10:4171632 | Car14g00231 | Car-Chr14:1082388 | 2.97E-83 | dispersed | |
| Car11g00819 | Car-Chr11:4855256 | Car14g00231 | Car-Chr14:1082388 | 4.42E-69 | dispersed | |
| Car14g00231 | Car-Chr14:1082388 | Car15g00530 | Car-Chr15:2873752 | 1.00E-141 | dispersed | |
| Car16g00315 | Car-Chr16:1929225 | Car14g00231 | Car-Chr14:1082388 | 6.21E-22 | dispersed | |
| Car16g00505 | Car-Chr16:3217420 | Car14g00231 | Car-Chr14:1082388 | 1.18E-06 | dispersed | |
| Car14g00231 | Car-Chr14:1082388 | Car02g01148 | Car-Chr2:7876461 | 0 | wgd | |
| Car14g00231 | Car-Chr14:1082388 | Car20g00475 | Car-Chr20:2649940 | 1.35E-145 | wgd | |
| Car14g00231 | Car-Chr14:1082388 | Car06g00365 | Car-Chr6:2000531 | 0 | wgd | |
| Car14g00231 | Car-Chr14:1082388 | Car07g00873 | Car-Chr7:4687123 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car14g00231 | K13126 | - | csv:101203793 | 1006.9 |