Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car14g00339 ATGAACAACTCCACAGGCTCCGGCGGATCAGATGCCACCGGCAACGTCGGCACTTTCCCCTACATAGTCGGAATTTCAGTCGGAGTTCTTTTCCTTCTCACAACCGTAACAATCGCCACCTATTTATGCACCAGAACCACCGTTCCGCAGCCGAATCGCCGTCGTCGGCCGGGGGAACGGCGGGATGTCATCGTCGATTTCGGACCGGGGCTCGAAGATGAGGCCATTAATGAATATCCGAAGATTCTGTACTCGGAAAAGAAATTGGAGGGAAAATTGGAGTCCGCCGCCGCAAGCGGTTGTTCGATTTGTTTGGGGGACTATAAAAACGAGGATGTTCTAAGGTTGTTGCCGGATTGTGGTCATATGTTTCACAGCGGCTGTATCGATCCGTGGTTAAGGCTGAACCCTAGCTGCCCCGTTTGCAGAACTTCCCCGGTGCCGACGCCGCTTTCGACCCCTCTGGCGGAGGTGGTTCCGTTGGCCAACGGAAGGCGTTGA 501 54.69 MNNSTGSGGSDATGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGERRDVIVDFGPGLEDEAINEYPKILYSEKKLEGKLESAAASGCSICLGDYKNEDVLRLLPDCGHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGRR 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1655459 1655959 + Carg03615-RA Car14g00339 160241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car14g00339 166 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
Car14g00339 166 Pfam Ring finger domain 101 143 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00847 Car-Chr4:4924695 Car14g00339 Car-Chr14:1655459 2.36E-13 dispersed
Car06g00887 Car-Chr6:6898415 Car14g00339 Car-Chr14:1655459 1.96E-35 dispersed
Car14g00339 Car-Chr14:1655459 Car14g01871 Car-Chr14:14481486 3.41E-30 dispersed
Car14g00339 Car-Chr14:1655459 Car03g01008 Car-Chr3:8393614 7.19E-54 wgd
Car14g00339 Car-Chr14:1655459 Car07g00808 Car-Chr7:4281919 2.90E-45 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car14g00339 - - mdm:103454174 195.282