Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car14g00406 ATGGATGACCCTTCCACTAACTTCTTCACAAATCTCTTCAAATTCAACACTTCTCCACCAAACCCTACTCCTCCTCCTCCTCCTCCTCCACCCTACTTCCTCCCCACTCACCTCCACGCGCCGCCGTCCTCTCCTCCTCTCCTAATCAAAATCAAGAGGAAGAAGACGAGGATGAAGACGACGAAGAACACGAAGAACACGAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGTAGCAGCCATTAGTGGACTATGTTTAAGCAATAGCCGACTCAACAAAGGACAATATTGGATCCCAACGCCATCACAAATCCTCATTGGTCCTACTCAATTCTCTTGTCCTGTTTGTTTCAAAACCTTCAATAGATATAACAACATGCAGATGCACATGTGGGGGCATGGCTCGCAATACAGGCGAGGGCCAGAATCATTAAGAGGCACACAGCCAACAGGGATGCTTAGGCTGCCATGCTATTGCTGCTCGCCAGGGTGCCGCAACAACATCGACCATCCACGAGCCAAGCCCTTGAAGGACTTCAGAACCCTTCAAACTCACTACAAACGCAAGCATGGGATCAAGCCGTTCATGTGTAGGAAGTGTGGGAAAGCCTTTGCTGTCAGAGGGGATTGGAGGACTCATGAGAAGAATTGTGGGAAGCTTTGGTATTGCATTTGTGGCTCTGATTTTAAGCACAAGAGATCCCTTAAAGACCATATCAAGGCCTTTGGCAATGGCCATGCTGCTTACAATAATTCTAATGCTAATAACAATCCCGATCATCGTCATCGCCATCATCATCATCATCGTCATCATCGTCATCACGGGTTCGATGAAGAGGAGGACCCGGCTTATTCGGAAGTCGAACAAGATCATGATTGA 879 47.21 MDDPSTNFFTNLFKFNTSPPNPTPPPPPPPPYFLPTHLHAPPSSPPLLIKIKRKKTRMKTTKNTKNTKEEEEEEEEEVAAISGLCLSNSRLNKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRRGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYNNSNANNNPDHRHRHHHHHRHHRHHGFDEEEDPAYSEVEQDHD 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2050856 2052947 - Carg03548-RA Car14g00406 160308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car14g00406 292 ProSitePatterns Zinc finger C2H2 type domain signature. 113 133 IPR013087 -
Car14g00406 292 ProSiteProfiles Zinc finger C2H2 type domain profile. 195 215 IPR013087 -
Car14g00406 292 MobiDBLite consensus disorder prediction 1 31 - -
Car14g00406 292 MobiDBLite consensus disorder prediction 246 292 - -
Car14g00406 292 ProSiteProfiles Zinc finger C2H2 type domain profile. 111 138 IPR013087 -
Car14g00406 292 MobiDBLite consensus disorder prediction 273 292 - -
Car14g00406 292 MobiDBLite consensus disorder prediction 1 17 - -
Car14g00406 292 Coils Coil 51 78 - -
Car14g00406 292 MobiDBLite consensus disorder prediction 53 75 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car06g00066 Car14g00406 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00444 Car-Chr8:2896094 Car14g00406 Car-Chr14:2050856 2.62E-100 dispersed
Car14g00406 Car-Chr14:2050856 Car20g00061 Car-Chr20:336849 2.85E-117 dispersed
Car14g00406 Car-Chr14:2050856 Car17g00906 Car-Chr17:7471048 2.74E-104 wgd
Car14g00406 Car-Chr14:2050856 Car06g00066 Car-Chr6:433765 4.68E-137 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4629 None None None None Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car14g00406 - - csv:101208110 405.986