Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car14g00535 ATGGACTTGACTCCTGCGATTTCCACCGCCGTCGCCGCCATTACCACCGGCGGAGGACCTGTCAAATCCCCTGAATTAGACACCGACACGCCCATCAAAATCCAACCCACCACCGAATCTCACCCTTTCACCAACGGTGTCCTCAAGCGCCACCATAACACCCCACCGCCTGTCGTCTACAAAGAATGCCTCAAGAATCACGCCGCCAGTTTAGGTGCCCATGCTTTGGACGGCTGTGGCGAGTTCATGCCTTCCTCTACCGCCACCGCCTCCGATCCCACTTCCCTTAAATGCGCTGCTTGCGGCTGCCACCGGAATTTCCACCGCCGTGAGCCGGAGGACTCAATAGCCACCCCGACGACAACCCATATCATTGAGTACCAACCTCACCATCGTCACCACCCACCGCCACCTGCAGCAAATCGAAGCCCAAGCTCTGCCTCTCCTCCACCGATCTCCTCCTCCTACTACCCTTCAGCTCCCCACATGCTTCTTGCCCTTTCCGGCGGACTGCCGGAAAACGCCAGCGGTGGATTCCACCACTCGATTCTGACTCCAAGCCCCAATTCGAGAAAGCGATTCAGAACAAAATTCACTCAAAATCAAAAGGAAAAAATGTATGAATTTGCAGAAAAAGTGGGTTGGAAGATTCAAAAACGAGACGAGGATATGATCCAAGAATTCTGCAGCAACGTCGGAGTAGACAGAGGCGTTCTCAAAGTTTGGATGCACAACAACAAAAACACTTTGGGGAAAAAGGACGGCACCCAGAACACCAACGGCAGCGGTGGCGACGGCGACGGCGACGGCGACGGCGATGAGAAAATGAACGGCGGCAACGAGCCACACGCCGCCGCAAATGGGTCGTCTTCTTCATCTTGA 882 54.88 MDLTPAISTAVAAITTGGGPVKSPELDTDTPIKIQPTTESHPFTNGVLKRHHNTPPPVVYKECLKNHAASLGAHALDGCGEFMPSSTATASDPTSLKCAACGCHRNFHRREPEDSIATPTTTHIIEYQPHHRHHPPPPAANRSPSSASPPPISSSYYPSAPHMLLALSGGLPENASGGFHHSILTPSPNSRKRFRTKFTQNQKEKMYEFAEKVGWKIQKRDEDMIQEFCSNVGVDRGVLKVWMHNNKNTLGKKDGTQNTNGSGGDGDGDGDGDEKMNGGNEPHAAANGSSSSS 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2939620 2940501 + Carg09784-RA Car14g00535 160437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car14g00535 293 MobiDBLite consensus disorder prediction 248 293 - -
Car14g00535 293 MobiDBLite consensus disorder prediction 249 264 - -
Car14g00535 293 MobiDBLite consensus disorder prediction 128 154 - -
Car14g00535 293 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 60 111 IPR006456 -
Car14g00535 293 Pfam ZF-HD protein dimerisation region 58 112 IPR006456 -
Car14g00535 293 MobiDBLite consensus disorder prediction 30 44 - -
Car14g00535 293 MobiDBLite consensus disorder prediction 16 52 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01696 Car-Chr4:9737682 Car14g00535 Car-Chr14:2939620 2.21E-24 dispersed
Car14g00535 Car-Chr14:2939620 Car18g01061 Car-Chr18:10824746 1.69E-63 dispersed
Car11g00862 Car-Chr11:5329178 Car14g00535 Car-Chr14:2939620 1.32E-144 wgd
Car14g00535 Car-Chr14:2939620 Car15g00270 Car-Chr15:1466885 9.50E-14 wgd
Car14g00535 Car-Chr14:2939620 Car04g02663 Car-Chr4:20741567 2.00E-13 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4646 PF04770 ZF-HD_dimer 6.30E-29 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car14g00535 - - csv:101204974 445.662