Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car14g00583 ATGAATAGAATCATACAGTCGCCGGCGTCCAAGTTCCGCCCCTTTCGGCGATACCTTGACGGCTCGTCCACCGATAAGACTACCGGCGTGGCGACCGCCACGGACGAACACCCTAATTACATCCTCCTCCGTTACCAAATCCTCGACCCTGACAGCGACATTGTCGCGCAATGGAATCGCTTGTTTCTAGTGACATGCCTGATTGCGCTATTCATCGATCCGATGTATTTCTACACGTCGTCTGTCGGGGGACCTGCCTGCCTGACATCGGAGGTGAATCTGGGAATAGTGATCACGTTCTTCAGAACGGTGATGGATCTGTTCTTCTTGCTGCACATGGTGCTCAAATTTCGAACCGCGTATGTGGCTCCGAGCTCTAGGGTTTTCGGAAGGGGAGAGCTGGTTATGGATGCCAGAGCCATTGCAAAGCGCTATTTGAAATCTGATTTTGTGATTGATCTCGCCGCCACTCTCCCCCTCCCACAAATAGTGATGTGGTTGGTGATTCCAGCAACAAGACATTCAAGGGTGGATCATGCCAACAACACAATCGCTCTCCTTGTTCTTCTCCAATACGTTCCAAGGCTGTTCCTCATCTTCCCTCTCAACCAACGCATCATCAAAACCACTGGCGTTGTTGCCAAAACTGCCTGGGCTGGTGCTGCCTACAATCTCATCCTCTACATGCTTGCCAGTCATGTGTTGGGATCTACATGGTATTTGTTGTCCATAGGGAGACAGTTCGCATGCTGGAAATCAGAGTGTGCAAAGGAAAATGCGTCCAAAGTTCTAACATGTCTTCCCATCTTCTTGGATTGCAACAGTTTGAATGACACTGACAGACAATATTGGCTGAATGTCACTCATGTTACTTCCAAATGCGATCCAAGGAATGAGAACATTAGGTTCAAGTTTGGAATGTTCTCTGATGCTTTCACCAGTGATGTTGCCTCCTCCCATTTCATTGCTAAGTACTTTTATTGTCTTTGGTGGGGCCTCAGAAATTTAAGTTCTTACGGACAAACTTTGGACACGACAACTTACCTTGGCGAGACATTATTTTGCATATCAACGTGCATAGTTGGGTTGATATTATTTTCACAACTCATTGGCAATATGCAGACATATTTGCAGTCAATGACAGTAAGACTCGAAGAATGGAGGATAAAGAGAAGGGACACTGAAGAATGGATGCGACGTCGTCAATTACCACCAGATTTGCAAGAACGAGTTCGACGATTCGTTCAATATAAATGGCAGGCCACGAGAGGAGTTAATGAAGAATCTATATTGCGTTCATTGCCCATTGACCTTCGCCGTGAGATTCAACAACATTTGTGTTTGTCGCTCGTTCGTCGTGTTCCTTTCTTCTCACAAATGGACGATCAACTTCTCGATGCCATATGCGAGCGCCTCGTCTCGTCCTTGTGTACCCAAGGAACGTATATCGTACGAGAGGATGACCCAGTTAACGAAATGTTGTTTATTATAAGAGGACAACTAGAGAGCTCGACAACAAATGGCGGTCGTTCTGGCTTTTTCAACTCAATCACATTAAAACCAGGTGATTTTTGTGGTGAAGAACTATTGACATGGGCTTTGATGCCAAGTTCCAGTTTGAATATGCCTTCTTCTACTCGAACCGTCCGAGCACGTACAGAAGTTGAAGCCTTCGCCCTTCGAGCTGAGGATCTCAAGTTCGTCGCCGGACAATTCAAACGCCTGCATAGCAAGAAACTACAACATGCCTTTAGATACTATTCCCATCAATGGAGGACCTGGGGTGCTTGCTTAATTCAAGTAGCTTGGAGGAGGCTTAAGAAGAGAAAATTGGCAAAGAAATCAGTATTCAGAAACAGCTTAAGCTATGGAGATTCAATACAAGAAGATATCGAATACGACGTCGAGCTAGCAGAAGAAAACTACGACGACAACGATGACGACAGTGATGAGGACATGTCTACTGCAGACTACATGAACAAAACTCAGCATCTAGGTGCTACACTTTTGGCTTCAAAGTTTGCTGCCAATACTAGAAAAGGAGTTCATCTAAAAGCCCAAAAATCCAAAGCTTCTAGTTTGAAAATGCCAAAGTTGTTTAAACCAGATGAACCTGATTTTTCTATGGATGGATGA 2136 45.22 MNRIIQSPASKFRPFRRYLDGSSTDKTTGVATATDEHPNYILLRYQILDPDSDIVAQWNRLFLVTCLIALFIDPMYFYTSSVGGPACLTSEVNLGIVITFFRTVMDLFFLLHMVLKFRTAYVAPSSRVFGRGELVMDARAIAKRYLKSDFVIDLAATLPLPQIVMWLVIPATRHSRVDHANNTIALLVLLQYVPRLFLIFPLNQRIIKTTGVVAKTAWAGAAYNLILYMLASHVLGSTWYLLSIGRQFACWKSECAKENASKVLTCLPIFLDCNSLNDTDRQYWLNVTHVTSKCDPRNENIRFKFGMFSDAFTSDVASSHFIAKYFYCLWWGLRNLSSYGQTLDTTTYLGETLFCISTCIVGLILFSQLIGNMQTYLQSMTVRLEEWRIKRRDTEEWMRRRQLPPDLQERVRRFVQYKWQATRGVNEESILRSLPIDLRREIQQHLCLSLVRRVPFFSQMDDQLLDAICERLVSSLCTQGTYIVREDDPVNEMLFIIRGQLESSTTNGGRSGFFNSITLKPGDFCGEELLTWALMPSSSLNMPSSTRTVRARTEVEAFALRAEDLKFVAGQFKRLHSKKLQHAFRYYSHQWRTWGACLIQVAWRRLKKRKLAKKSVFRNSLSYGDSIQEDIEYDVELAEENYDDNDDDSDEDMSTADYMNKTQHLGATLLASKFAANTRKGVHLKAQKSKASSLKMPKLFKPDEPDFSMDG 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3167288 3170704 + Carg09736-RA Car14g00583 160485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car14g00583 711 ProSiteProfiles cAMP/cGMP binding motif profile. 456 586 IPR000595 -
Car14g00583 711 CDD CAP_ED 456 587 IPR000595 -
Car14g00583 711 SMART cnmp_10 456 587 IPR000595 -
Car14g00583 711 SUPERFAMILY cAMP-binding domain-like 386 581 IPR018490 -
Car14g00583 711 Pfam Ion transport protein 58 383 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Car14g00583 711 MobiDBLite consensus disorder prediction 697 711 - -
Car14g00583 711 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 37 709 - -
Car14g00583 711 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 18 37 709 - -
Car14g00583 711 Gene3D Helix hairpin bin 383 447 - -
Car14g00583 711 MobiDBLite consensus disorder prediction 685 711 - -
Car14g00583 711 Gene3D - 61 381 - -
Car14g00583 711 Gene3D Jelly Rolls 454 574 IPR014710 -
Car14g00583 711 SUPERFAMILY Voltage-gated potassium channels 49 378 - -
Car14g00583 711 Pfam Cyclic nucleotide-binding domain 479 566 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00767 Car-Chr12:7356547 Car14g00583 Car-Chr14:3167288 0 dispersed
Car14g00583 Car-Chr14:3167288 Car20g00437 Car-Chr20:2459197 3.37E-165 dispersed
Car01g01198 Car-Chr1:11081202 Car14g00583 Car-Chr14:3167288 0 transposed
Car02g00892 Car-Chr2:6324982 Car14g00583 Car-Chr14:3167288 0 transposed
Car03g00524 Car-Chr3:5255998 Car14g00583 Car-Chr14:3167288 1.29E-110 transposed
Car10g00125 Car-Chr10:587288 Car14g00583 Car-Chr14:3167288 1.62E-49 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car14g00583 K05391 - csv:101216651 1273.07