Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car14g00607 | ATGTCTTCTTCCACCTATTCCAACTCCCCTTGTGCAGCCTGCAAGTTCCTCCGCCGAAAATGCCTACCCGATTGCGTTTTCGCGCCCTATTTCCCACCGGAGGAGCCCCAAAAGTTCGCCAACGTTCACAAGATCTTCGGTGCCAGCAATGTCAGCAAACTGCTGAACGAAGTCCAGCCACACCAGCGGGACGACGCCGTGAACTCGCTCGCCTACGAGGCCGAGGCGAGGATGAAAGACCCCGTCTACGGCTGCGTTGGCGCCATCTCTATACTCCAAAGGCAAGTCATCAAGCTCCAAAAAGAGCTCGACGCTACCAACGCCAATCTCATTCGCTACGCCTGCACCGAAATCCCCGCCCCGTCTCCGTCCTCGTCCTCGCAATACGCTCGAAGGTCGTCGTCGACCAGCCACGACGGAAGCTCATCCACCTCTAGCTACGGCCACTACTATTCCAATCCCTACTTTTCTCCATGGAGTAACAGCCATAATGGCTCTTGTGGAGATGGCCATGACAAACCAGAGTTCAAGTAA | 534 | 55.62 | MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQRDDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNANLIRYACTEIPAPSPSSSSQYARRSSSTSHDGSSSTSSYGHYYSNPYFSPWSNSHNGSCGDGHDKPEFK | 177 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 14 | 3379792 | 3380325 | - | Carg09712-RA | Car14g00607 | 160509 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car14g00607 | 177 | ProSiteProfiles | LOB domain profile. | 9 | 110 | IPR004883 | - | |
| Car14g00607 | 177 | Coils | Coil | 89 | 109 | - | - | |
| Car14g00607 | 177 | MobiDBLite | consensus disorder prediction | 120 | 177 | - | - | |
| Car14g00607 | 177 | MobiDBLite | consensus disorder prediction | 120 | 167 | - | - | |
| Car14g00607 | 177 | Pfam | Lateral organ boundaries (LOB) domain | 10 | 106 | IPR004883 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car04g02589 | Car14g00607 | CCT | |
| Car04g02589 | Car14g00607 | ECH | |
| Car11g01357 | Car14g00607 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car13g00709 | Car-Chr13:8335544 | Car14g00607 | Car-Chr14:3379792 | 5.46E-60 | dispersed | |
| Car14g00607 | Car-Chr14:3379792 | Car15g00151 | Car-Chr15:843451 | 7.21E-50 | dispersed | |
| Car10g00093 | Car-Chr10:418205 | Car14g00607 | Car-Chr14:3379792 | 1.08E-70 | wgd | |
| Car11g01357 | Car-Chr11:11112461 | Car14g00607 | Car-Chr14:3379792 | 6.00E-94 | wgd | |
| Car11g00069 | Car-Chr11:374319 | Car14g00607 | Car-Chr14:3379792 | 4.37E-71 | wgd | |
| Car14g00607 | Car-Chr14:3379792 | Car18g00177 | Car-Chr18:974033 | 1.18E-60 | wgd | |
| Car14g00607 | Car-Chr14:3379792 | Car04g02589 | Car-Chr4:20334234 | 1.24E-69 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 4654 | PF03195 | LOB | 2.90E-42 | No_clan | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car14g00607 | - | - | csv:101219482 | 313.923 |