Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car14g00743 | ATGCGGATGAGTTGTAATGGTTGCCGAGTTCTTCGCAAAGGTTGCAGTGAAAATTGCAGTATTCGACCTTGTTTGCACTGGATCAAGAGTCCTGATTCTCAAGCCAACGCTACTGTTTTCCTCGCCAAGTTCTATGGCCGTGCTGGACTCATGAACCTAATCAACGCTGGTCCTGATCATCTCCGTCCCGCAATTTTTAGATCTCTTCTCTATGAGGCTTGTGGACGTATTGTGAATCCGATTTACGGATCGGTTGGATTGTTGTGGTCTGGTAGTTGGCAACTCTGTCAAGCGGCTGTTGAGGCCGTTCTTAAAGGTGCTCCGATCACGCCGATTAACTCTGAGGCGGCGGCTACTGGCGATGGACCGCCGTTGAAAGCGTACGATATTCGTCACGTTTCTAAGGATGAAAACTCCGCTGCATCTAACGACGGCGGAGTCAACCGGCGAGTCAAGACTCGGTGCCGGTTCAAGCGGTCTGCGGTGAAGACGAAAGCGTGTAAAGGAATCTCATCCACCGTGGATGAGTCGACTCGACGACTGTGTTCTATCGAGTTGAACCGATCGTCAAGCGGCGAGTCGTCGTTGAGTCACCAATCCGACTCTCTACATGTTGAAAACGAGAGCAAAGAAACCGATAGCATGATTTCGGTATCGACGGCGAAGTTCTCTCCTCCTCCAGTACTGCCAGTTTTATTCCGATCAGAATCCACTTCCGTACCAAAACGTCCAGGTCACGGCGGCGGCACTGTGCCAATTCCGCAAAGCGAATTAGCTCTAGAACTAACTCTGGGGATGAAGCCGGTGTCACGTGCCGATCACGTGATTCCAATGAAGAAGCGGAAGATAGAGGCCGACGTTGGGTTGAGGCCCAATAACAACGAGGCGTGCAATACTGTATTGGGCCTTGATTTTGCAGCCTAA | 924 | 50.97 | MRMSCNGCRVLRKGCSENCSIRPCLHWIKSPDSQANATVFLAKFYGRAGLMNLINAGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAAATGDGPPLKAYDIRHVSKDENSAASNDGGVNRRVKTRCRFKRSAVKTKACKGISSTVDESTRRLCSIELNRSSSGESSLSHQSDSLHVENESKETDSMISVSTAKFSPPPVLPVLFRSESTSVPKRPGHGGGTVPIPQSELALELTLGMKPVSRADHVIPMKKRKIEADVGLRPNNNEACNTVLGLDFAA | 307 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 14 | 4170324 | 4171758 | - | Carg22271-RA | Car14g00743 | 160645 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car14g00743 | 307 | MobiDBLite | consensus disorder prediction | 188 | 211 | - | - | |
| Car14g00743 | 307 | Pfam | Lateral organ boundaries (LOB) domain | 4 | 103 | IPR004883 | - | |
| Car14g00743 | 307 | ProSiteProfiles | LOB domain profile. | 3 | 109 | IPR004883 | - | |
| Car14g00743 | 307 | MobiDBLite | consensus disorder prediction | 188 | 202 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car01g01399 | Car-Chr1:12199842 | Car14g00743 | Car-Chr14:4170324 | 4.23E-48 | dispersed | |
| Car03g00839 | Car-Chr3:6795366 | Car14g00743 | Car-Chr14:4170324 | 8.25E-54 | dispersed | |
| Car07g00582 | Car-Chr7:2957023 | Car14g00743 | Car-Chr14:4170324 | 5.38E-54 | dispersed | |
| Car09g00237 | Car-Chr9:1307442 | Car14g00743 | Car-Chr14:4170324 | 6.10E-48 | dispersed | |
| Car10g00222 | Car-Chr10:1062938 | Car14g00743 | Car-Chr14:4170324 | 5.27E-84 | dispersed | |
| Car11g00244 | Car-Chr11:1370866 | Car14g00743 | Car-Chr14:4170324 | 8.69E-40 | dispersed | |
| Car14g00743 | Car-Chr14:4170324 | Car16g00839 | Car-Chr16:6032229 | 3.61E-21 | dispersed | |
| Car01g00353 | Car-Chr1:2001161 | Car14g00743 | Car-Chr14:4170324 | 1.78E-176 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 4666 | PF03195 | LOB | 2.60E-24 | No_clan | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car14g00743 | - | - | csv:101208245 | 495.352 |