Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car14g00879 ATGGCGGCTGCAGCTACAACAAGCGTTGTGCCGCCGAATCGGCGGCGTGCGGTTAGTGCCCCGGAAGACAAGTTGGAATTCGAGACGACGGAGGGGGTTGAACCGATCTTGAGTTTCGATCAGATGGGCATTAAGGATGATCTTCTCCGTGGAATATATGCTTACGGTTTTGAAAAGCCCTCGGCTATTCAGCAGAGAGCTGTGAGGCCGATTATTGAGGGTCGAGATGTTATTGCTCAAGCCCAATCTGGAACTGGCAAGACCTCCATGATTGCACTTACCGTTTGCCAGGTGGTTGATACATCCAGTAGAGAGGTGCAGGCCTTGATCTTGTCCCCTACGAGAGAATTGGCAACTCAGACAGAGAAGGTTATATTGGCAATTGGCGACTACATTAATATACAAGCACACTCATGTATCGGAGGAAAAAGTGTGGGTGAAGATATCAGAAAGCTTGAGTTTGGAGTTCAGGTTGTGTCAGGAACTCCTGGAAGAGTCTGTGACATGATCAAGAGAAGGACACTGCGTACCCGAGCCATTAAGCTGTTAATTTTGGATGAGTCTGATGAAATGCTGAGCAGAGGGTTTAAAGACCAAATTTATGATGTATATCGATATCTCCCACCAGAACTTCAGGTTGTCTTGATTTCTGCTACCCTTCCTCATGAAATCCTTGAGATGACAAACAAGTTTATGACAGATCCTGTGAGGATCCTTGTCAAGCGTGATGAGTTAACTTTAGAGGGTATTAAGCAATTCTTCGTTGCAGTTGAAAGGGAAGAGTGGAAATTTGATACCTTATGTGATCTTTATGACACCTTGACTATCACCCAAGCTGTAATTTTCTGTAACACTAAGCGAAAGGTTGAATGGTTGACTGAGAAGATGCGAAGTAATAACTTCACAGTTTCCCATATGCATGGGGACATGCCTCAAAAGGAAAGAGATGCAATCATGGGGGAGTTCCGATCTGGAACTACTCGTGTCCTAATCACTACTGATGTTTGGGCAAGAGGGCTTGATGTTCAGCAGGTATCACTAGTGATAAATTATGACCTTCCAAACAATCGAGAGCTTTACATTCACAGGATAGGAAGGTCGGGTCGGTTTGGGCGCAAGGGTGTTGCTATTAACTTTGTGAAAAGTGATGACATCAAGATCCTGAGAGATATTGAGCAATACTACAGTACCCAGATTGATGAGATGCCCATGAACGTTGCTGATTTGATTTAA 1233 44.61 MAAAATTSVVPPNRRRAVSAPEDKLEFETTEGVEPILSFDQMGIKDDLLRGIYAYGFEKPSAIQQRAVRPIIEGRDVIAQAQSGTGKTSMIALTVCQVVDTSSREVQALILSPTRELATQTEKVILAIGDYINIQAHSCIGGKSVGEDIRKLEFGVQVVSGTPGRVCDMIKRRTLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPHEILEMTNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVEWLTEKMRSNNFTVSHMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 5219907 5224186 - Carg11190-RA Car14g00879 160781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car14g00879 410 Pfam DEAD/DEAH box helicase 62 224 IPR011545 GO:0003676|GO:0005524
Car14g00879 410 Pfam Helicase conserved C-terminal domain 263 371 IPR001650 -
Car14g00879 410 PANTHER BNAC03G41130D PROTEIN 21 403 - -
Car14g00879 410 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 68 238 IPR014001 -
Car14g00879 410 CDD SF2_C_DEAD 250 380 - -
Car14g00879 410 Gene3D - 246 410 IPR027417 -
Car14g00879 410 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 37 65 IPR014014 GO:0003724
Car14g00879 410 CDD DEADc_EIF4AIII_DDX48 39 239 - -
Car14g00879 410 SMART helicmild6 290 371 IPR001650 -
Car14g00879 410 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 21 403 - -
Car14g00879 410 SMART ultradead3 56 253 IPR014001 -
Car14g00879 410 MobiDBLite consensus disorder prediction 1 21 - -
Car14g00879 410 Gene3D - 27 245 IPR027417 -
Car14g00879 410 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 393 IPR027417 -
Car14g00879 410 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 249 410 IPR001650 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00924 Car-Chr6:7169298 Car14g00879 Car-Chr14:5219907 1.35E-92 dispersed
Car14g00879 Car-Chr14:5219907 Car14g01103 Car-Chr14:9783385 0 dispersed
Car07g00702 Car-Chr7:3602136 Car14g00879 Car-Chr14:5219907 1.34E-10 transposed
Car14g00230 Car-Chr14:1077851 Car14g00879 Car-Chr14:5219907 1.69E-67 transposed
Car01g00230 Car-Chr1:1255220 Car14g00879 Car-Chr14:5219907 5.46E-14 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car14g00879 K13025 - csv:101222664 799.66