Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car14g00950 ATGGCGGATCTCAAAGAGCGGTTGCTTCCACCGAAACCTTCATCTGCTATTAATCTTAGGGAGACAATTAATAATCGACCATCAGCCTCTGGGAGGGTGCCTTTTCAAGGTGTGGATGTTCTAGGGCTGAAGAAGCGAGGGCAGGGACTTAGATCTTGGATCCGAGTAGATTCCTCTGGGAACTCCCAGATTATTGAGGTTGATAAGTTCACCATGATGCGTCGTTGTGATCTACCTGCGCGTGATTTACGTTTGCTTGATCCTTTGTTTGTTTACCCTTCAACAATTCTTGGTAGAGAGAAGGCTATTGTGGTCAATCTAGAGCAGATTCGATGCATTATAACAGCTGAAGAAGTTTTGCTATTAAATTCCCTTGATAGTTATGTACTGCAGTATGTGGTAGAGCTACAGAGGCGATTGAAAACCACCGGGGTTGATGAGGTTTGGCAGAATGACGCAAATCATGGAGCTGACTTAAATCGAAGAAGAGGAAGCAGGAATTTCGATAATGTATTTGGAAACACCTCTCCTGATTATTTGCCCTTTGAATTCAGAGCTTTAGAAGTTGCTTTGGAAGCAGCTTGTACATTTCTTGATTCCCAGGCTGCAGAGTTAGAAATCGAAGCATACCCGTTGCTAGATGAACTTACATCCAAAATCAGTACATTAAATTTGGAGCGCGTCCGCCGCTTGAAAAGCAGACTTGTTGCCCTGACTCGTAGGGTTCAGAAGGTTAGGGATGAAATAGAGCAGCTCATGGATGACGATGGAGATATGGCAGAAATGTATCTGACTGAGAAGAAAATGAGAATGGAATCCTTTGTTTATGGCGATCAGTCTGTTACTGGATACAGATCAATTGATGGAGCATCTTTTTCTGCTCCTGTTTCTCCTGTATCTTCACCACCCGAATCTCGCAAGCTCGAGAAGAGCCTGAGCATTGCCAGGAGCCGGCATGAGAGTACGAAAAGTTCAGAAAGTTCAACTGAAAATATAGAGGAGCTTGAGATGCTTCTTGAAGCATATTTTGTTGTCATTGATAGCACCCTGAATAAGTTGACATCGTTGAAGGAATACATCGATGACACAGAAGATTTCATCAACATCCAGCTGGATAATGTACGTAATCAGTTGATCCAGTTTGAGCTGCTACTCACTACTGCAACATTTGTCGTTGCCATTTTTGGGGTGGTAGCTGGAATTTTTGGCATGAATTTTGAAATACCAATGTTTGGGAATCCTGATGCATTCAAATGGGTTCTTCTAATAACAGGAGTAAGTGGAATCATCATATTTTCTGCATTTGTTTGGTTTTTCAGATACAAAAGACTGATGCCACTCTAA 1344 42.34 MADLKERLLPPKPSSAINLRETINNRPSASGRVPFQGVDVLGLKKRGQGLRSWIRVDSSGNSQIIEVDKFTMMRRCDLPARDLRLLDPLFVYPSTILGREKAIVVNLEQIRCIITAEEVLLLNSLDSYVLQYVVELQRRLKTTGVDEVWQNDANHGADLNRRRGSRNFDNVFGNTSPDYLPFEFRALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKMRMESFVYGDQSVTGYRSIDGASFSAPVSPVSSPPESRKLEKSLSIARSRHESTKSSESSTENIEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFEIPMFGNPDAFKWVLLITGVSGIIIFSAFVWFFRYKRLMPL 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 5749064 5751827 + Carg11262-RA Car14g00950 160852

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car14g00950 447 MobiDBLite consensus disorder prediction 293 307 - -
Car14g00950 447 MobiDBLite consensus disorder prediction 309 329 - -
Car14g00950 447 MobiDBLite consensus disorder prediction 293 329 - -
Car14g00950 447 Pfam CorA-like Mg2+ transporter protein 327 435 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Car14g00950 447 Coils Coil 228 255 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car14g00950 K16075 MRS2, MFM1; magnesium transporter - csv:101217419 800.816
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g00165 Car14g00950 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00995 Car-Chr8:6846508 Car14g00950 Car-Chr14:5749064 4.53E-123 dispersed
Car11g01150 Car-Chr11:9219259 Car14g00950 Car-Chr14:5749064 2.39E-115 dispersed
Car12g00100 Car-Chr12:537639 Car14g00950 Car-Chr14:5749064 6.70E-145 dispersed
Car14g00950 Car-Chr14:5749064 Car17g00166 Car-Chr17:1027434 1.99E-118 dispersed
Car01g00165 Car-Chr1:864890 Car14g00950 Car-Chr14:5749064 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g869 . . . . . . . Bma13g00660 . . . Cma14g01051 Car01g00165 Car14g00950 . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00506 . Bda12g00562 . . . . . Cmo01g00196 Cmo14g01066 . . . . Cpe02g01612 Cpe03g00907 . . . . . . . . . . . . . . . Csa03g02968 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car14g00950 CST 1 447 MRS2 Gene Family AT1G16010 84.1 3.4e-205 711.4
Car01g00165 CST 1 448 MRS2 Gene Family AT1G16010 83.5 3.2e-203 704.9
Car12g00100 . 8 381 MRS2 Gene Family AT1G16010 53.7 8.4e-111 397.9
Car08g00995 CST 1 358 MRS2 Gene Family AT5G64560 79.3 9.6e-156 547.0
Car17g00166 CST 1 366 MRS2 Gene Family AT5G64560 78.8 9.6e-156 547.0
Car19g00047 . 1 373 MRS2 Gene Family AT5G64560 69.0 1.8e-130 463.0
Car11g01150 CST 39 498 MRS2 Gene Family AT3G19640 64.6 3.8e-149 525.4
Car19g00399 CST 14 421 MRS2 Gene Family AT3G19640 51.0 8.3e-112 401.4
Car04g00508 . 1 458 MRS2 Gene Family AT3G58970 62.5 5.7e-144 508.1
Car16g00352 . 1 441 MRS2 Gene Family AT3G58970 63.9 2.9e-140 495.7
Car12g00100 . 9 381 MRS2 Gene Family AT2G03620 66.3 9.7e-133 470.7
Car14g00950 CST 13 447 MRS2 Gene Family AT2G03620 53.7 2.2e-113 406.4
Car01g00165 CST 13 448 MRS2 Gene Family AT2G03620 52.9 1.5e-112 403.7
Car04g00508 . 63 457 MRS2 Gene Family AT4G28580 50.3 3.1e-91 332.8
Car16g00352 . 56 440 MRS2 Gene Family AT4G28580 50.4 1.5e-90 330.5
Car08g00995 CST 1 320 MRS2 Gene Family AT5G09690 77.5 9.4e-128 453.8
Car17g00166 CST 1 328 MRS2 Gene Family AT5G09690 74.3 1.5e-125 446.4
Car19g00047 . 1 335 MRS2 Gene Family AT5G09690 65.5 1.3e-108 390.2
Car01g00165 CST 40 384 MRS2 Gene Family AT5G09690 50.1 3.1e-78 289.3
Car14g00950 CST 40 383 MRS2 Gene Family AT5G09690 50.6 4.0e-78 288.9
Car08g00995 CST 23 280 MRS2 Gene Family AT5G09720 70.1 1.2e-89 327.0
Car17g00166 CST 23 288 MRS2 Gene Family AT5G09720 66.4 1.6e-86 316.6
Car19g00047 . 37 295 MRS2 Gene Family AT5G09720 61.7 3.8e-75 278.9
Car14g00950 CST 1 447 MRS2 Gene Family AT1G80900 82.6 7.4e-200 693.7
Car01g00165 CST 1 448 MRS2 Gene Family AT1G80900 81.7 3.4e-197 684.9
Car12g00100 . 5 381 MRS2 Gene Family AT1G80900 54.1 1.3e-108 390.6
Car13g00204 . 3 268 MRS2 Gene Family AT5G22830 62.5 7.0e-76 282.0
Car01g01007 . 114 257 MRS2 Gene Family AT5G22830 80.6 5.4e-60 229.2
Car13g00205 . 114 235 MRS2 Gene Family AT5G22830 79.5 2.5e-49 193.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004467 2 3 1 2 1 1 2 1 1 1 1 1 1 2 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car14g00950 Car_Chr14 FPKM 10.907038 12.907979 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0