Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car14g00978 ATGAACGATCTTCTTTCGGATTCCTTTGAGATCCCTCGGGGTCAGCCTTCTAGAGGAGGAGACATTGAGCTTGGAACAAATGCTCCTACAAGTGCAGGAGATCTGGGCTTGGATGATTTCTTTAAAAAGGTCCAAGATATTGAAAAACAGAATGAGAAGCTGGACAGGTTGTTGCGAAAGCTCCAGGATTCACACGAGGAGTCCAAAGCTGTGACTAAAGCTCCAGCAATGAAAGCAATCAAGCAGCGAATGGAAAAGGATGTTGATGAAGTTGGAAAAGTTGCACGTTTTGTGAAGAGCAAGGTCGAAGAACTTGACAAGGAGAATCTGGCAAATAGGCAGAAGCCTGGATGTGGTAAAGGATCAGGTGTAGATAGATCAAGAACAGCAACTACTCTTGCCTTAAAAAAGAAGTTGAAAGACAAGATGACTGAGTTCCAGATTTTGCGGGAAAAAGTTCATCAAGAGTATCGGGAGGTTGTTGAGAGACGGATTTTCACAGTCACGGGCGCTAGGGCTGACGAAGAGACCATCGAGAAATTAATCGAAACTGGGGATAGCGAACAAATTTTTCAGAAGGCAATTCAAGAACAAGGGCGAGGACAGGTAATGGACACTCTAGCTGAAATTCAAGAGCGTCACAGCGCAGTTAGAGAACTGGAGAGGAAGTTACTCGAGCTACAGCAGGTATTTCTGGACATGGCTGTTTTGGTAGATGCACAGGGGGATATGCTCGACAATATCGAATCACATGTTACAAGTGCAGTAGATCATGTGCAACAAGGGAACACTGCACTTCAAAAGGCAAAGAAGCTTCAAAAGAATTCAAGGAAATGGATGTGCATTGCCATAATAATCCTTCTAATCATTGTTGTGGTTGTAGTAGTGGGAGTCCTAAAGCCATGGAATAGTGGTAAGGGTGCGTAA 927 44.01 MNDLLSDSFEIPRGQPSRGGDIELGTNAPTSAGDLGLDDFFKKVQDIEKQNEKLDRLLRKLQDSHEESKAVTKAPAMKAIKQRMEKDVDEVGKVARFVKSKVEELDKENLANRQKPGCGKGSGVDRSRTATTLALKKKLKDKMTEFQILREKVHQEYREVVERRIFTVTGARADEETIEKLIETGDSEQIFQKAIQEQGRGQVMDTLAEIQERHSAVRELERKLLELQQVFLDMAVLVDAQGDMLDNIESHVTSAVDHVQQGNTALQKAKKLQKNSRKWMCIAIIILLIIVVVVVVGVLKPWNSGKGA 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 7045782 7062296 + Carg26637-RA Car14g00978 160880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car14g00978 308 MobiDBLite consensus disorder prediction 1 35 - -
Car14g00978 308 Coils Coil 210 230 - -
Car14g00978 308 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 207 269 IPR000727 -
Car14g00978 308 Pfam SNARE domain 243 295 IPR000727 -
Car14g00978 308 Coils Coil 37 71 - -
Car14g00978 308 Pfam Syntaxin 39 242 IPR006011 GO:0016020
Car14g00978 308 ProSitePatterns Syntaxin / epimorphin family signature. 213 252 IPR006012 GO:0005484|GO:0006886|GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00135 Car-Chr2:783341 Car14g00978 Car-Chr14:7045782 9.19E-51 dispersed
Car14g00978 Car-Chr14:7045782 Car18g00320 Car-Chr18:1958807 1.65E-92 dispersed
Car14g00978 Car-Chr14:7045782 Car13g00552 Car-Chr13:7435500 1.19E-99 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car14g00978 K08486 - csv:101203075 521.161