Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car14g00994 | ATGGCTACTTCCTTCAACTTTGTGTTCCTTTGGTTGAGTTTTGCAGCCTTTTTGGCGGACCCCATAGCGTGTAGGCTCCTTGATCCCATTGGTATCCAAAAGATCAACGGTGCATGGCGCAATGCTCATGCCACCTTCTACGGTGACATGGGGGGTGGCGAAACTATGCATCAACGTTATTTCTTACTTGCAACAGAGGGAGCTTGCGGGTATGGAAACCTACACGAACAAGGTTACGGGCTAGAGACGGCGGCGATAAGCACAGCACTTTTCAACAACGGTTTAACCTGTGGAGCATGCTTCGAGTTAAAGTGTCAGCCCGGAGGACACTATACGTGCCTACCAAACTCGGGCACAATCAAAATAACCGCCACAAACTTCTGCCCACCAAACTACACGAAAACAGTAGACATTTGGTGCAATCCACCCCAAGAGCACTTCGACCTTTCTCTCTACATGTTTACTAAAATCGCCCCTTATCGTGCTGGTGTCATCAATGTTAGCTATCGTAGGGTGCTTTGCCAGAAACAAGGTGGCGTCCGGTTCCAATTAAATGGGAACCCATATTGGCTAATCGTCCTACCCTTTAATGTTGGAGGTGCTGGTGATGTTGTTGGTGTTAACATTAAAGGCTCTTCCACTGGGTGGGTTAAGATGTCAAAGAACTGGGGCCAAAATTGGGAGACTGGTACCGTTTTTGTGGGCCAGAGCCTGTCCTTTCAAGTCACTACCAGTGATTCGAGGACCCTTCAATTTGATAACGTCGTGCCCAGCTCTTGGCAGTTCGGCCAAACCTTTGAAGGCAAGCGGAATTTCTAA | 819 | 48.35 | MATSFNFVFLWLSFAAFLADPIACRLLDPIGIQKINGAWRNAHATFYGDMGGGETMHQRYFLLATEGACGYGNLHEQGYGLETAAISTALFNNGLTCGACFELKCQPGGHYTCLPNSGTIKITATNFCPPNYTKTVDIWCNPPQEHFDLSLYMFTKIAPYRAGVINVSYRRVLCQKQGGVRFQLNGNPYWLIVLPFNVGGAGDVVGVNIKGSSTGWVKMSKNWGQNWETGTVFVGQSLSFQVTTSDSRTLQFDNVVPSSWQFGQTFEGKRNF | 272 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 14 | 7558331 | 7559217 | + | Carg27390-RA | Car14g00994 | 160896 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car14g00994 | 272 | Pfam | Expansin C-terminal domain | 180 | 257 | IPR007117 | - | |
| Car14g00994 | 272 | ProSiteProfiles | Expansin, Cellulose-binding-like domain profile. | 189 | 268 | IPR007117 | - | |
| Car14g00994 | 272 | Pfam | Lytic transglycolase | 83 | 169 | IPR009009 | - | |
| Car14g00994 | 272 | ProSiteProfiles | Expansin, family-45 endoglucanase-like domain profile. | 66 | 179 | IPR007112 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car14g00994 | Car-Chr14:7558331 | Car03g00371 | Car-Chr3:4536607 | 3.50E-96 | dispersed | |
| Car14g00994 | Car-Chr14:7558331 | Car14g00996 | Car-Chr14:7797640 | 1.88E-158 | proximal |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car14g00994 | - | - | cmos:111436984 | 510.76 |