Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car14g01026 ATGCTATCGTTTTCTGGTTATTTCGCTGTAGCTTCCGCCGTCGTACGGCGGCGGCAACTTCCAAGGGTTTTTGTTGTCTTTGATCCCAGAAACAGAGTCTTTGTTTTCACCAAATTAGCCACACTTGGAGGAGGGTACCAACAGAGGAAACAAGGAAGAAGAAAGGAAATGGGAAGAGGAAGAGTGGAGCTGAAGAGGATAGAGAACAAGATAAACAGGCAAGTCACATTTGCAAAGAGAAGAAATGGGCTTTTGAAGAAGGCTTATGAGCTGTCTGTTCTTTGTGATGCGGAGGTTGCTCTTATCATCTTCTCCAATCGTGGCAAGCTCTATGAGTTCTGCAGCACTTCCAACATGCTCAAAACCCTCGAGAGGTACCAGAAATGCAGCTATGGAGCTGTGGAGGTCACTAAACCTGCCAAAGAACTCGAGAGTAGCTATAGAGAATACTTGAAGCTCAAGGCTAGGTTTGAGTCTCTTCAAACAACTCAGCGAAATCTTCTTGGTGAGGACTTGGGTCCATTGAACTCAAAAGAGCTTGAGCAGCTGGAGCGTCAGCTGGAGTCTTCTTTGAAACAAGTTAGGTCCACTAAGACTCAGTACATGCTGGACCAGCTATCTGATCTACAGAACAAGGAACAAATGCTGATTGAAACCAACAGAGCTCTGCAGATCAAGTTGGAAGAAATAAGTTCAAGAAATAACATAAGGCTAACATGGGAAGCTGGAGACCAAAGCATGTCATATGCTCCACAAGATGCCCAAACTCAAGGCTTCTTTCAGGCACTGGACTGCAATCCCACTTTGCAAATTGGGTACACTTCTGCAGTGTCGGACCAAATTACAGCCACCACTGCCCCAACTCATGCCCAACAAGTCAATGGCTTCCTCCCTGGTTGGATGCTTTGA 909 45.87 MLSFSGYFAVASAVVRRRQLPRVFVVFDPRNRVFVFTKLATLGGGYQQRKQGRRKEMGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTSNMLKTLERYQKCSYGAVEVTKPAKELESSYREYLKLKARFESLQTTQRNLLGEDLGPLNSKELEQLERQLESSLKQVRSTKTQYMLDQLSDLQNKEQMLIETNRALQIKLEEISSRNNIRLTWEAGDQSMSYAPQDAQTQGFFQALDCNPTLQIGYTSAVSDQITATTAPTHAQQVNGFLPGWML 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 8791655 8796976 - Carg24908-RA Car14g01026 160928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car14g01026 302 Coils Coil 206 226 - -
Car14g01026 302 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 66 113 IPR002100 GO:0003677|GO:0046983
Car14g01026 302 Coils Coil 177 200 - -
Car14g01026 302 Pfam K-box region 140 227 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car14g01026 302 ProSitePatterns MADS-box domain signature. 59 113 IPR002100 GO:0003677|GO:0046983
Car14g01026 302 ProSiteProfiles MADS-box domain profile. 57 117 IPR002100 GO:0003677|GO:0046983
Car14g01026 302 ProSiteProfiles K-box domain profile. 143 233 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00155 Car-Chr8:946020 Car14g01026 Car-Chr14:8791655 1.28E-78 dispersed
Car08g00826 Car-Chr8:5519380 Car14g01026 Car-Chr14:8791655 1.48E-67 dispersed
Car09g01147 Car-Chr9:11972960 Car14g01026 Car-Chr14:8791655 6.90E-38 dispersed
Car12g00105 Car-Chr12:565386 Car14g01026 Car-Chr14:8791655 5.86E-56 dispersed
Car14g01026 Car-Chr14:8791655 Car18g00017 Car-Chr18:76206 3.77E-88 dispersed
Car17g01324 Car-Chr17:9910000 Car14g01026 Car-Chr14:8791655 2.88E-47 dispersed
Car01g00388 Car-Chr1:2203234 Car14g01026 Car-Chr14:8791655 3.04E-171 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4689 PF01486 K-box 6.40E-27 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car14g01026 K09264 - csv:101208204 459.144