Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car14g01103 | ATGGCTGGTTTGGCTCCCGAAGGATCTCAATTTGACGCCCGTCAGTATGACACCAAAATGAATGAGTTACTTTCATCGGATGGACAGGATTTCTTCACCTCATACGATGAAGTTTATGATAGCTTTGATTCTATGGGCTTGCAAGAAAACCTCCTCAGAGGCATTTATGCCTATGGTTTTGAGAAGCCATCTGCAATTCAGCAAAGGGGAATTGTTCCTTTTTGCAAAGGCCTTGATGTGATCCAACAAGCGCAGTCTGGAACAGGGAAGACTGCAACCTTTTGCTCTGGCATTTTGCAGCAACTTGATTATGGTCTCGTGCAATGCCAGGCTTTGGTCCTGGCACCCACTAGGGAGCTTGCTCAACAGATTGAGAAGGTTATGCGAGCCCTTGGTGATTATCTTGGTGTAAAGGTTCATGCTTGTGTTGGTGGGACAAGTGTACGTGAGGACCAACGCATTCTTCAAGCTGGTGTTCATGTTGTTGTTGGTACTCCTGGTCGTGTGTTTGATATGTTGCGTAGACAATCACTTCGTCCAGACTACATTAAGATGTTTGTGTTGGATGAAGCTGATGAAATGCTTTCTCGTGGATTTAAGGATCAGATTTATGACATTTTCCAGCTGCTACCATCCAAGATTCAGGTTGGTGTCTTCTCTGCTACAATGCCACCTGAAGCCCTTGAGATCACCAGGAAGTTCATGAACAAGCCTGTTAGGATTCTTGTAAAGCGTGACGAGCTCACCTTGGAAGGTATCAAGCAGTTCTATGTCAATGTTGATAAGGAAGACTGGAAGCTTGAGACACTCTGTGATCTTTACGAGACTTTGGCCATCACCCAGAGTGTCATTTTTGTGAATACTCGTCGTAAAGTTGATTGGCTCACTGATAAGATGCGAAGCCGTGACCACACAGTATCTGCTACCCATGGTGACATGGACCAGAACACCCGTGACATTATTATGCGTGAGTTCCGTTCGGGTTCATCTAGAGTTCTCATAACCACTGATCTATTGGCTCGTGGTATTGATGTCCAACAGGTTTCTCTTGTTATTAACTTTGATCTGCCGACACAACCCGAGAATTACCTTCATCGTATAGGAAGAAGTGGACGTTTTGGAAGAAAGGGTGTTGCCATCAACTTCGTAACTACGGATGATGAAAGAATGCTTTTCGACATTCAGAAGTTCTATAATGTCTTAATTGAAGAACTGCCAGCAAATGTTGCTGATCTCCTGTGA | 1242 | 44.36 | MAGLAPEGSQFDARQYDTKMNELLSSDGQDFFTSYDEVYDSFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTTDDERMLFDIQKFYNVLIEELPANVADLL | 413 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 14 | 9783385 | 9788093 | - | Carg06424-RA | Car14g01103 | 161005 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car14g01103 | 413 | Pfam | Helicase conserved C-terminal domain | 266 | 374 | IPR001650 | - | |
| Car14g01103 | 413 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 252 | 413 | IPR001650 | - | |
| Car14g01103 | 413 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 71 | 241 | IPR014001 | - | |
| Car14g01103 | 413 | CDD | DEADc_EIF4A | 45 | 242 | - | - | |
| Car14g01103 | 413 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 40 | 68 | IPR014014 | GO:0003724 | |
| Car14g01103 | 413 | PANTHER | EUKARYOTIC INITIATION FACTOR 4A-2 | 23 | 413 | - | - | |
| Car14g01103 | 413 | PANTHER | RNA HELICASE | 23 | 413 | - | - | |
| Car14g01103 | 413 | SMART | ultradead3 | 59 | 256 | IPR014001 | - | |
| Car14g01103 | 413 | CDD | SF2_C_DEAD | 253 | 383 | - | - | |
| Car14g01103 | 413 | SMART | helicmild6 | 293 | 374 | IPR001650 | - | |
| Car14g01103 | 413 | Gene3D | - | 30 | 248 | IPR027417 | - | |
| Car14g01103 | 413 | Pfam | DEAD/DEAH box helicase | 65 | 226 | IPR011545 | GO:0003676|GO:0005524 | |
| Car14g01103 | 413 | Gene3D | - | 249 | 413 | IPR027417 | - | |
| Car14g01103 | 413 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 187 | 195 | IPR000629 | - | |
| Car14g01103 | 413 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 109 | 394 | IPR027417 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car01g00041 | Car14g01103 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car01g00230 | Car-Chr1:1255220 | Car14g01103 | Car-Chr14:9783385 | 1.65E-57 | dispersed | |
| Car05g00361 | Car-Chr5:2086514 | Car14g01103 | Car-Chr14:9783385 | 6.55E-31 | dispersed | |
| Car07g00702 | Car-Chr7:3602136 | Car14g01103 | Car-Chr14:9783385 | 6.65E-10 | dispersed | |
| Car14g00230 | Car-Chr14:1077851 | Car14g01103 | Car-Chr14:9783385 | 7.40E-64 | dispersed | |
| Car14g00879 | Car-Chr14:5219907 | Car14g01103 | Car-Chr14:9783385 | 0 | dispersed | |
| Car14g01103 | Car-Chr14:9783385 | Car14g01834 | Car-Chr14:14266770 | 8.04E-91 | dispersed | |
| Car01g00041 | Car-Chr1:212081 | Car14g01103 | Car-Chr14:9783385 | 4.23E-32 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car14g01103 | K03257 | - | csv:101223055 | 811.216 |