Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car14g01104 ATGGGAAACCAGAAGCTAAAGTGGACGTCGGAGGAGGAAGAGGCACTTTTGGCAGGCGTGAATAAGCACGGTCCCGGAAAGTGGAAGAACATTCTTAAAGATCCCGAGTTTGCTCCGTCTCTCACTCATCGCTCTAACATTGACCTCAAGGACAAATGGCGTAATTTGAGTGTCAGTACTGCTTCACAAGGCTCAAAAGAGAAGTCTAGGGCTCCTAAAGCAAAAGCTATCGTTGCTGCTATTTCTAACCACCAAAACTCTGCTCCTGCTAAGTTTAATGCATCTGCTGATACTGCAGGGGACGATACACCAAACAACAGCACACAAGATGGAAAAAATGTCCCAAGGTATTATACAATGATTTTTGAAGCCCTTTCAACCATAAAAGATTCAAATGGATGTGACATAGGTACTATTGTTAACTTTATTAAGCAAAGGCACGAGGTGCCACAAAACTTTAGAAGGCAATTAAGCTCAAAGTTGAGGAGGCTTGTTTCACAAGGAAAGCTCGAAAAGGTTCAGAATTGCTACCAGGTAAAGAAAGACAATTCATTGGCAGTTAATACTCCTACTCCCAAACAAAAAGATGTCAGGCAACGGATATCACAATATACCATGGGAGGGGGGATGCCATCAGGGGGGGATACGTTGGAAGACGCGGCGAAAGCGGCGGCCTACAAAGTTGCTGATGCAGAGAACAAATCTTTCTTAGCTGCAGAAGCTGTCAAGGAGGCAGAGAGAATTGCAAAGATGGCAGAAGATACAGATTCAATGCTACAGATTATAAAAGAGATATATGAAAAATGTTCCCGTGGTGAAAGTATTCTCCTGGCTTAG 837 43.49 MGNQKLKWTSEEEEALLAGVNKHGPGKWKNILKDPEFAPSLTHRSNIDLKDKWRNLSVSTASQGSKEKSRAPKAKAIVAAISNHQNSAPAKFNASADTAGDDTPNNSTQDGKNVPRYYTMIFEALSTIKDSNGCDIGTIVNFIKQRHEVPQNFRRQLSSKLRRLVSQGKLEKVQNCYQVKKDNSLAVNTPTPKQKDVRQRISQYTMGGGMPSGGDTLEDAAKAAAYKVADAENKSFLAAEAVKEAERIAKMAEDTDSMLQIIKEIYEKCSRGESILLA 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 9789328 9793300 - Carg06425-RA Car14g01104 161006

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car14g01104 278 SMART sant 4 59 IPR001005 -
Car14g01104 278 Gene3D - 8 87 - -
Car14g01104 278 Pfam linker histone H1 and H5 family 115 174 IPR005818 GO:0000786|GO:0003677|GO:0006334
Car14g01104 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Car14g01104 278 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Car14g01104 278 CDD SANT_TRF 7 56 - -
Car14g01104 278 SUPERFAMILY Homeodomain-like 3 59 IPR009057 -
Car14g01104 278 PANTHER TELOMERE REPEAT-BINDING FACTOR 4-RELATED 1 277 - -
Car14g01104 278 SUPERFAMILY Winged helix DNA-binding domain 110 189 IPR036390 -
Car14g01104 278 Pfam Myb-like DNA-binding domain 6 56 IPR001005 -
Car14g01104 278 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 113 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Car14g01104 278 Gene3D - 110 197 IPR036388 -
Car14g01104 278 MobiDBLite consensus disorder prediction 88 113 - -
Car14g01104 278 PANTHER SINGLE MYB HISTONE 4 1 277 IPR044597 GO:0003691
Car14g01104 278 SMART h15plus2 111 176 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car14g01104 K09422 MYBP; transcription factor MYB, plant - csv:101202785 493.426
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00826 Car-Chr3:6723064 Car14g01104 Car-Chr14:9789328 2.26E-35 dispersed
Car07g00569 Car-Chr7:2884994 Car14g01104 Car-Chr14:9789328 5.31E-36 dispersed
Car14g01104 Car-Chr14:9789328 Car16g00279 Car-Chr16:1733520 1.07E-16 dispersed
Car14g01104 Car-Chr14:9789328 Car01g00041 Car-Chr1:212081 6.80E-164 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car04g00417 . 1 336 Single Myb Histone (SMH) Gene Family AT1G49950 53.8 8.1e-65 244.6
Car03g00826 . 1 247 Single Myb Histone (SMH) Gene Family AT1G49950 53.5 1.3e-62 237.3
Car07g00569 . 1 247 Single Myb Histone (SMH) Gene Family AT1G49950 52.0 4.1e-61 232.3
Car07g00569 . 1 249 Single Myb Histone (SMH) Gene Family AT5G67580 53.5 6.6e-67 251.5
Car03g00826 . 1 247 Single Myb Histone (SMH) Gene Family AT5G67580 53.6 9.5e-66 247.7
Car07g00569 . 1 249 Single Myb Histone (SMH) Gene Family AT3G49850 51.8 2.9e-59 226.1
Car03g00826 . 1 247 Single Myb Histone (SMH) Gene Family AT3G49850 50.6 8.0e-57 218.0
Car14g01104 . 1 277 Single Myb Histone (SMH) Gene Family AT1G17520 51.4 3.1e-69 259.2
Car01g00041 CST 1 274 Single Myb Histone (SMH) Gene Family AT1G17520 51.0 5.4e-66 248.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013733 1 1 1 0 1 0 2 0 0 0 0 0 1 1 1 2 0 2 1 0 0 0 1 1 1 0 1 4 2 1 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4695 PF00538 Linker_histone 1.60E-10 CL0123 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car14g01104 Car_Chr14 FPKM 16.194218 23.065826 28.510353 28.474571 22.363169 22.228758 21.138144 27.290449 29.151854 29.091721