Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car14g01104 ATGGGAAACCAGAAGCTAAAGTGGACGTCGGAGGAGGAAGAGGCACTTTTGGCAGGCGTGAATAAGCACGGTCCCGGAAAGTGGAAGAACATTCTTAAAGATCCCGAGTTTGCTCCGTCTCTCACTCATCGCTCTAACATTGACCTCAAGGACAAATGGCGTAATTTGAGTGTCAGTACTGCTTCACAAGGCTCAAAAGAGAAGTCTAGGGCTCCTAAAGCAAAAGCTATCGTTGCTGCTATTTCTAACCACCAAAACTCTGCTCCTGCTAAGTTTAATGCATCTGCTGATACTGCAGGGGACGATACACCAAACAACAGCACACAAGATGGAAAAAATGTCCCAAGGTATTATACAATGATTTTTGAAGCCCTTTCAACCATAAAAGATTCAAATGGATGTGACATAGGTACTATTGTTAACTTTATTAAGCAAAGGCACGAGGTGCCACAAAACTTTAGAAGGCAATTAAGCTCAAAGTTGAGGAGGCTTGTTTCACAAGGAAAGCTCGAAAAGGTTCAGAATTGCTACCAGGTAAAGAAAGACAATTCATTGGCAGTTAATACTCCTACTCCCAAACAAAAAGATGTCAGGCAACGGATATCACAATATACCATGGGAGGGGGGATGCCATCAGGGGGGGATACGTTGGAAGACGCGGCGAAAGCGGCGGCCTACAAAGTTGCTGATGCAGAGAACAAATCTTTCTTAGCTGCAGAAGCTGTCAAGGAGGCAGAGAGAATTGCAAAGATGGCAGAAGATACAGATTCAATGCTACAGATTATAAAAGAGATATATGAAAAATGTTCCCGTGGTGAAAGTATTCTCCTGGCTTAG 837 43.49 MGNQKLKWTSEEEEALLAGVNKHGPGKWKNILKDPEFAPSLTHRSNIDLKDKWRNLSVSTASQGSKEKSRAPKAKAIVAAISNHQNSAPAKFNASADTAGDDTPNNSTQDGKNVPRYYTMIFEALSTIKDSNGCDIGTIVNFIKQRHEVPQNFRRQLSSKLRRLVSQGKLEKVQNCYQVKKDNSLAVNTPTPKQKDVRQRISQYTMGGGMPSGGDTLEDAAKAAAYKVADAENKSFLAAEAVKEAERIAKMAEDTDSMLQIIKEIYEKCSRGESILLA 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 9789328 9793300 - Carg06425-RA Car14g01104 161006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car14g01104 278 SMART sant 4 59 IPR001005 -
Car14g01104 278 Gene3D - 8 87 - -
Car14g01104 278 Pfam linker histone H1 and H5 family 115 174 IPR005818 GO:0000786|GO:0003677|GO:0006334
Car14g01104 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Car14g01104 278 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Car14g01104 278 CDD SANT_TRF 7 56 - -
Car14g01104 278 SUPERFAMILY Homeodomain-like 3 59 IPR009057 -
Car14g01104 278 PANTHER TELOMERE REPEAT-BINDING FACTOR 4-RELATED 1 277 - -
Car14g01104 278 SUPERFAMILY Winged helix DNA-binding domain 110 189 IPR036390 -
Car14g01104 278 Pfam Myb-like DNA-binding domain 6 56 IPR001005 -
Car14g01104 278 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 113 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Car14g01104 278 Gene3D - 110 197 IPR036388 -
Car14g01104 278 MobiDBLite consensus disorder prediction 88 113 - -
Car14g01104 278 PANTHER SINGLE MYB HISTONE 4 1 277 IPR044597 GO:0003691
Car14g01104 278 SMART h15plus2 111 176 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00826 Car-Chr3:6723064 Car14g01104 Car-Chr14:9789328 2.26E-35 dispersed
Car07g00569 Car-Chr7:2884994 Car14g01104 Car-Chr14:9789328 5.31E-36 dispersed
Car14g01104 Car-Chr14:9789328 Car16g00279 Car-Chr16:1733520 1.07E-16 dispersed
Car14g01104 Car-Chr14:9789328 Car01g00041 Car-Chr1:212081 6.80E-164 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4695 PF00538 Linker_histone 1.60E-10 CL0123 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car14g01104 K09422 - csv:101202785 493.426